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[185746_s_at]

Description W06H8.1C /REP_DB=WormBase Gene ID /WP=CE25148 /TR=Q9N5B9 /GB=AAF39980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 66      6grp_total > 06      4grp_total > 58      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 801
1 2 3 4 range
A 1615.4
(-1.6)
P 		2086.6
(3)
P 		1752.1
(-0.3)
P 		1469.7
(-3)
P 		617
B 1563.6
(-1.9)
P 		1803.8
(2)
P 		1868.6
(3)
P 		1495.6
(-3)
P 		373
C 1730
(1.1)
P 		1854.9
(2.2)
P 		1941.5
(3)
P 		1285.2
(-3)
P 		656
avr 1636.3
(-0.4) 		1915.1
(3) 		1854.1
(2.3) 		1416.8
(-3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 820
1 2 3 4 5 6 range
A 1546.6
(2)
P 		1645.6
(3)
P 		1077.2
(-3)
P 		1303.3
(-0.6)
P 		1216
(-1.5)
P 		1276.2
(-0.9)
P 		568
B 1643.3
(3)
P 		1426.1
(0.3)
P 		1482.4
(1)
P 		1390.8
(-0.1)
P 		1339.7
(-0.7)
P 		1154.5
(-3)
P 		489
C 1897.3
(3)
P 		1375.5
(-2)
P 		1476.4
(-1.1)
P 		1293.8
(-2.8)
P 		1381.9
(-2)
P 		1277.3
(-3)
P 		620
avr 1695.7
(3) 		1482.4
(0.2) 		1345.3
(-1.6) 		1329.3
(-1.8) 		1312.5
(-2) 		1236
(-3) 		460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 588.2
(3)
P 		452.9
(0.8)
P 		458
(0.9)
P 		215.1
(-3)
P 		373
B 498.6
(3)
P 		445.5
(1.2)
P 		433
(0.8)
P 		318.7
(-3)
P 		180
C 572.7
(1.6)
P 		533.3
(1.1)
P 		676.7
(3)
P 		216.7
(-3)
P 		460
avr 553.2
(3) 		477.2
(1.5) 		522.6
(2.4) 		250.2
(-3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 469
1 2 3 4 5 6 range
A 285.1
(-2.1)
P 		585.3
(3)
P 		234.6
(-3)
P 		330.6
(-1.4)
P 		366.9
(-0.7)
P 		310.7
(-1.7)
P 		351
B 571.8
(3)
P 		474.7
(0.2)
P 		360
(-3)
P 		368.4
(-2.8)
P 		544.3
(2.2)
P 		430.5
(-1)
P 		212
C 703.3
(3)
P 		419.7
(-0.8)
P 		375.8
(-1.4)
P 		260.2
(-3)
P 		447.2
(-0.5)
P 		427.6
(-0.7)
P 		443
avr 520.1
(3) 		493.2
(2.2) 		323.5
(-2.9) 		319.7
(-3) 		452.8
(1) 		389.6
(-0.9) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185746_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11849
Sequence Type Exemplar sequence
Representative Public ID W06H8.1C NCBI
Target Description W06H8.1C /REP_DB=WormBase Gene ID /WP=CE25148 /TR=Q9N5B9 /GB=AAF39980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029023(11), NM_001029025(11), NM_001029022(11), NM_001029021(11), NM_001029024(11), NM_001029026(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029023 NCBI Caenorhabditis elegans Receptor Mediated Endocytosis family member (rme-1) (rme-1) mRNA, complete cds. 11/11 None
NM_001029025 NCBI Caenorhabditis elegans Receptor Mediated Endocytosis family member (rme-1) (rme-1) mRNA, complete cds. 11/11 None
NM_001029022 NCBI Caenorhabditis elegans Receptor Mediated Endocytosis family member (rme-1) (rme-1) mRNA, complete cds. 11/11 None
NM_001029021 NCBI Caenorhabditis elegans Receptor Mediated Endocytosis family member (rme-1) (rme-1) mRNA, complete cds. 11/11 None
NM_001029024 NCBI Caenorhabditis elegans Receptor Mediated Endocytosis family member (rme-1) (rme-1) mRNA, complete cds. 11/11 None
NM_001029026 NCBI Caenorhabditis elegans Receptor Mediated Endocytosis family member (rme-1) (rme-1) mRNA, complete cds. 11/11 None
SNAP00000002856 ENSEMBL cdna:SNAP chromosome:CEL140:V:6217453:6219853:1 11/11 None
GENEFINDER00000002863 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6212870:6219853:1 11/11 None
W06H8.1c ENSEMBL cdna:known chromosome:CEL140:V:6211434:6220242:1 gene:W06H8.1 11/11 A 
W06H8.1e ENSEMBL cdna:known chromosome:CEL140:V:6212455:6219853:1 gene:W06H8.1 11/11 None
W06H8.1b ENSEMBL cdna:known chromosome:CEL140:V:6212455:6220168:1 gene:W06H8.1 11/11 A 
W06H8.1a ENSEMBL cdna:known chromosome:CEL140:V:6212741:6219853:1 gene:W06H8.1 11/11 None
W06H8.1d ENSEMBL cdna:known chromosome:CEL140:V:6214501:6220216:1 gene:W06H8.1 11/11 A 
W06H8.1f.2 ENSEMBL cdna:known chromosome:CEL140:V:6217419:6219853:1 gene:W06H8.1 11/11 None
W06H8.1f.1 ENSEMBL cdna:known chromosome:CEL140:V:6217421:6219853:1 gene:W06H8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6211478-6219853(+) 100.0 100.0
Public Domain and Genome References
Ensembl W06H8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39980 Receptor mediated endocytosis protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024194.1| Receptor Mediated Endocytosis family member (rme-1) [Caenorhabditis elegans] gb|AAK27716.1| receptor-mediated endocytosis 1 isoform I [Caenorhabditis elegans] 0.0
blast AAF39978 Receptor mediated endocytosis protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024192.1| Receptor Mediated Endocytosis family member (rme-1) [Caenorhabditis elegans] 0.0
blast AAF39979 Receptor mediated endocytosis protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024193.1| Receptor Mediated Endocytosis family member (rme-1) [Caenorhabditis elegans] gb|AAK27715.1| receptor-mediated endocytosis 1 isoform II [Caenorhabditis elegans] 0.0
blast AAL65796 Receptor mediated endocytosis protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024196.1| Receptor Mediated Endocytosis family member (rme-1) [Caenorhabditis elegans] 0.0
blast CAE71845 Hypothetical protein CBG18887 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.9E-4
Sequence
Target Sequence 
>C. ELEGANS:185746_S_AT
atctccaggagacttcccagatgtgaacaagatgagagagaagcttcaaacacaggactt
tagcaaattcaatccactcaagccaaagcttttggaggttgtcgatggaatgcttgccac
tgatatagcacgattgatggctcaaattccaaaggaagaagccgcagccccagcaggatc
aaacggaagcgccgatccaactgtcagaggaggagccttcagccaaacaacagaagcaga
aactccgttcggtttcggacgtggagaaggattcgacaagggagccgacgaagccgaatg
ggttgttagtcgggaacgcacaactgccgactcgacattcgaaagtctcggaccagttaa
cggatatctcagcggaagagctgccaaggagcacatggttaagagcaaattaccaaactc
agtgctcggaaaagtatggaaattggctgatattgacaaggatggacagttggatgctga
cgagtttgcacttgccaactatttgatcaatttgaaattggaaggacacgagattccaag
tgagctgccaaaacatctcatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCAGGAGACTTCCCAGATGTG 584 31 1158 Antisense
AATTCAATCCACTCAAGCCAAAGCT 257 175 1223 Antisense
GCGCCGATCCAACTGTCAGAGGAGG 287 287 1346 Antisense
AGAGGAGGAGCCTTCAGCCAAACAA 289 67 1363 Antisense
ACAGAAGCAGAAACTCCGTTCGGTT 357 97 1387 Antisense
GGAGCCGACGAAGCCGAATGGGTTG 623 521 1438 Antisense
TGTTAGTCGGGAACGCACAACTGCC 496 561 1461 Antisense
ACAACTGCCGACTCGACATTCGAAA 470 111 1477 Antisense
CGGACCAGTTAACGGATATCTCAGC 491 243 1506 Antisense
GATGCTGACGAGTTTGCACTTGCCA 686 413 1630 Antisense
GTGAGCTGCCAAAACATCTCATCCC 599 483 1697 Antisense
Sequence Source Affymetrix Proprietary Database