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[185745_at]

Description Y57G11C.5 /REP_DB=WormBase Gene ID /WP=CE14934 /TR=O18231 /GB=CAB16507.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 129.6
(-1)
P 		63.4
(-3)
A 		98
(-2)
A 		262.1
(3)
P 		199
B 169.7
(3)
P 		156.7
(2.2)
A 		74.4
(-3)
P 		129.9
(0.5)
P 		95
C 143.9
(0)
P 		104.5
(-2)
A 		84.8
(-3)
A 		202.4
(3)
P 		118
avr 147.7
(0.3) 		108.2
(-1.8) 		85.7
(-3) 		198.1
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 122.5
(0.4)
P 		137.6
(1.1)
P 		103.2
(-0.6)
P 		52.7
(-3)
A 		123.2
(0.4)
P 		177.3
(3)
P 		125
B 157.7
(3)
P 		118.8
(-0.2)
P 		84.4
(-3)
P 		95.2
(-2.1)
A 		154
(2.7)
P 		150.5
(2.4)
P 		73
C 142.6
(1.9)
P 		136.8
(1.6)
P 		53.3
(-3)
A 		93.1
(-0.8)
A 		93.1
(-0.8)
P 		161.8
(3)
P 		109
avr 140.9
(1.4) 		131.1
(0.7) 		80.3
(-3) 		80.3
(-3) 		123.4
(0.1) 		163.2
(3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 47.2
(3)
P 		13.8
(-3)
A 		25.6
(-0.9)
A 		38.4
(1.4)
P 		33
B 54.1
(3)
P 		38.7
(0.5)
A 		17.2
(-3)
P 		27.7
(-1.3)
P 		37
C 47.6
(3)
P 		30
(-2.9)
A 		29.6
(-3)
A 		34.1
(-1.5)
P 		18
avr 49.6
(3) 		27.5
(-2.2) 		24.1
(-3) 		33.4
(-0.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 22.6
(-1.4)
P 		48.9
(3)
P 		22.5
(-1.5)
P 		13.4
(-3)
A 		37.2
(1)
P 		43.2
(2)
P 		36
B 54.9
(1.9)
P 		39.5
(-0.3)
P 		20.5
(-3)
P 		25.2
(-2.3)
A 		62.6
(3)
P 		56.1
(2.1)
P 		42
C 52.9
(2.8)
P 		41.8
(1.2)
P 		13.6
(-3)
A 		18.7
(-2.2)
A 		30.1
(-0.6)
P 		54.2
(3)
P 		41
avr 43.5
(1.6) 		43.4
(1.6) 		18.9
(-3) 		19.1
(-3) 		43.3
(1.5) 		51.2
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10040
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.5 NCBI
Target Description Y57G11C.5 /REP_DB=WormBase Gene ID /WP=CE14934 /TR=O18231 /GB=CAB16507.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070379 NCBI Caenorhabditis elegans Y57G11C.5 (Y57G11C.5) mRNA, complete cds. 11/11 None
Y57G11C.5 ENSEMBL cdna:known chromosome:CEL140:IV:14761788:14764571:-1 gene:Y57G11C.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003465 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003579 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14761842-14762887(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.5
Entrez Gene 190371 Entrez gene
SwissProt O18231 EMBL-EBI
WormBase CE37440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16507 Hypothetical protein Y57G11C.5 [Caenorhabditis elegans] ref|NP_502780.2| Y57G11C.5 [Caenorhabditis elegans] 0.0
blast CAB60548 Hypothetical protein Y73F8A.20 [Caenorhabditis elegans] ref|NP_502855.1| Y73F8A.20 [Caenorhabditis elegans] 1.0E-165
blast CAE68174 Hypothetical protein CBG13833 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:185745_AT
tggcttcactttggcattgggctcatttgagagttggaagtgaggggatacgtggaaatg
ctctccaaaatacattccataatcgtgtagactctgattctcttctgaaaaaacatcaat
cctacgctgcccgtattgattctccatttacatatcttgttatggttcaaggaatcccca
tcttcactggatcttattttggagccccgccaccgaaatcaacggagattttcataaatg
cccccgaaagaatccgccatcatcgtacgtacatcacaaaacaccgtcgatatccaaaag
agactcgaaaacagaaattgatgagaagagttcgtaaatctgaagaccgagaaaaggaaa
aggataagaaaagagcacggaaagaacagaaaaatcaaaaagtcgaaaatctggaacaat
ctacgactgcatcttcaacatcatcactttcatctccagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTTCACTTTGGCATTGGGCTCA 171 543 164 Antisense
TCGTGTAGACTCTGATTCTCTTCTG 576 605 246 Antisense
GAAAAAACATCAATCCTACGCTGCC 280 355 270 Antisense
AATCCTACGCTGCCCGTATTGATTC 61 169 281 Antisense
GCCCGTATTGATTCTCCATTTACAT 175 287 292 Antisense
AATCCCCATCTTCACTGGATCTTAT 422 167 336 Antisense
CCCCGCCACCGAAATCAACGGAGAT 62 257 368 Antisense
GGAGATTTTCATAAATGCCCCCGAA 19 517 387 Antisense
ACGTACATCACAAAACACCGTCGAT 348 95 430 Antisense
TCTGGAACAATCTACGACTGCATCT 665 607 573 Antisense
ACATCATCACTTTCATCTCCAGAAA 674 105 601 Antisense
Sequence Source Affymetrix Proprietary Database