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[185744_at]

Description H14N18.2 /REP_DB=WormBase Gene ID /WP=CE17974 /TR=O61979 /GB=AAC17780.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 82.3
(-1.7)
A 		37.3
(-2.7)
A 		22.5
(-3)
A 		288.8
(3)
P 		266
B 60.1
(-2.2)
A 		39.8
(-2.5)
A 		5.8
(-3)
A 		391.8
(3)
P 		386
C 59.9
(-2.2)
A 		65.2
(-2.1)
A 		11.2
(-3)
A 		371.3
(3)
P 		360
avr 67.4
(-2) 		47.4
(-2.4) 		13.2
(-3) 		350.6
(3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 8.3
(-3)
A 		18.5
(-2.8)
A 		116.2
(-1)
A 		266.9
(1.8)
P 		329.5
(3)
P 		202.1
(0.6)
P 		321
B 76.2
(-2.6)
A 		58
(-3)
A 		93.7
(-2.2)
A 		276.1
(2)
P 		317.3
(3)
P 		212.5
(0.6)
P 		259
C 22
(-3)
A 		61.9
(-2.2)
A 		83.8
(-1.8)
A 		328.7
(3)
P 		252.2
(1.5)
P 		226.8
(1)
P 		307
avr 35.5
(-3) 		46.1
(-2.8) 		97.9
(-1.6) 		290.6
(2.8) 		299.7
(3) 		213.8
(1) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 30
(1)
A 		8.1
(-2.6)
A 		5.9
(-3)
A 		42.3
(3)
P 		36
B 19.2
(-1.7)
A 		9.8
(-2.4)
A 		1.3
(-3)
A 		83.5
(3)
P 		82
C 19.8
(-1.4)
A 		18.7
(-1.5)
A 		3.9
(-3)
A 		62.6
(3)
P 		59
avr 23
(-1) 		12.2
(-2.1) 		3.7
(-3) 		62.8
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 1.5
(-3)
A 		6.6
(-2.7)
A 		25.3
(-1.5)
A 		67.7
(1.1)
P 		99.4
(3)
P 		49.2
(-0.1)
P 		98
B 26.5
(-2.6)
A 		19.3
(-3)
A 		22.8
(-2.8)
A 		73.1
(-0.1)
P 		128.9
(3)
P 		79.2
(0.3)
P 		110
C 8.2
(-3)
A 		18.9
(-2.1)
A 		21.3
(-1.9)
A 		66.1
(1.7)
P 		81.6
(3)
P 		75.9
(2.5)
P 		73
avr 12.1
(-3) 		14.9
(-2.8) 		23.1
(-2.3) 		69
(0.7) 		103.3
(3) 		68.1
(0.7) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11815
Sequence Type Exemplar sequence
Representative Public ID H14N18.2 NCBI
Target Description H14N18.2 /REP_DB=WormBase Gene ID /WP=CE17974 /TR=O61979 /GB=AAC17780.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072905 NCBI Caenorhabditis elegans H14N18.2 (H14N18.2) mRNA, complete cds. 11/11 None
SNAP00000023337 ENSEMBL cdna:SNAP chromosome:CEL140:V:8935226:8936852:1 11/11 None
GENEFINDER00000023339 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8931569:8936852:1 11/11 None
H14N18.2 ENSEMBL cdna:known chromosome:CEL140:V:8935226:8936852:1 gene:H14N18.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8935226-8936853(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H14N18.2
Entrez Gene 186745 Entrez gene
SwissProt O61979 EMBL-EBI
WormBase CE17974 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17780 Hypothetical protein H14N18.2 [Caenorhabditis elegans] ref|NP_505306.1| H14N18.2 [Caenorhabditis elegans] 1.0E-169
blast AAC17780 Hypothetical protein H14N18.2 [Caenorhabditis elegans] ref|NP_505306.1| H14N18.2 [Caenorhabditis elegans] 1.0E-153
blast CAE72050 Hypothetical protein CBG19134 [Caenorhabditis briggsae] 5.0E-85
blast CAE72050 Hypothetical protein CBG19134 [Caenorhabditis briggsae] 7.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505306.1 1 5-22
H14N18.2 1 5-22
SNAP00000023337 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:185744_AT
agatgatgatatccctccacatggagagtttctttttgcagaggaccaatgtgtaattgt
acatgctacagaaagatccgatatcaaaacggagctgaaaatgaagaaaaagtggccatt
atgcaaaatcgcgaaagtcagcacccaagcgacaccggataagaccaatcaaatcgaagt
ggttcaggccaaactgaaattggctttcaatgaaaaatcgtttagccaagacaaaagttt
tctcgatttacacactctaatgagagttttcctaaatagtcgatatattgaagcgttgta
ccttgacgaatcagtttcccttgatgaaattctgcaattttccgatcaaaaaagttttgc
catgctatttcccgtttgtcagctcacggtggtgcttttacaaccagaaaatacatcaga
agccgcagagttctggaattttattctaaactttgttattgattctccactagtgttggt
atcttctctgcaaattgatcggaataaaattgatatggtattctacaatcctgtttacaa
atcttgcaacttcaagcacttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGATGATATCCCTCCACATGGA 297 67 300 Antisense
AAATCGCGAAAGTCAGCACCCAAGC 376 117 425 Antisense
GCACCCAAGCGACACCGGATAAGAC 473 293 440 Antisense
GTTTTCTCGATTTACACACTCTAAT 647 447 536 Antisense
GTACCTTGACGAATCAGTTTCCCTT 155 459 597 Antisense
TATTTCCCGTTTGTCAGCTCACGGT 438 259 665 Antisense
AGCTCACGGTGGTGCTTTTACAACC 495 77 680 Antisense
CTTTGTTATTGATTCTCCACTAGTG 292 223 750 Antisense
CACTAGTGTTGGTATCTTCTCTGCA 361 197 767 Antisense
GGTATTCTACAATCCTGTTTACAAA 422 505 816 Antisense
AATCTTGCAACTTCAAGCACTTGTC 144 171 839 Antisense
Sequence Source Affymetrix Proprietary Database