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[185742_at]

Description Y46H3B.1 /REP_DB=WormBase Gene ID /WP=CE24310 /TR=Q9N4W4 /GB=AAF60621.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 53      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 111.1
(3)
P 		96.6
(1.4)
P 		78.4
(-0.7)
A 		58
(-3)
A 		53
B 107.4
(3)
P 		99
(2.3)
P 		54.5
(-1.4)
A 		35.4
(-3)
A 		72
C 136.8
(3)
P 		87
(0.7)
P 		51.3
(-0.9)
A 		6.8
(-3)
A 		130
avr 118.4
(3) 		94.2
(1.3) 		61.4
(-1) 		33.4
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 98.8
(2.1)
P 		105.2
(2.4)
M 		115.3
(3)
P 		38.6
(-1.3)
A 		53.4
(-0.4)
A 		7.1
(-3)
A 		108
B 91.8
(2.3)
P 		97.1
(3)
P 		74.9
(0.1)
A 		89.1
(2)
A 		73.7
(-0)
A 		50.8
(-3)
A 		46
C 84.1
(2)
P 		90.2
(3)
A 		89
(2.8)
P 		68.2
(-0.6)
P 		81.4
(1.5)
A 		54
(-3)
A 		36
avr 91.6
(2.4) 		97.5
(3) 		93.1
(2.6) 		65.3
(-0.2) 		69.5
(0.2) 		37.3
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 40.4
(3)
P 		21
(-0.6)
P 		20.5
(-0.7)
A 		8.5
(-3)
A 		32
B 34.2
(3)
P 		24.4
(0.8)
P 		12.6
(-1.9)
A 		7.5
(-3)
A 		27
C 45.3
(3)
P 		25
(0.2)
P 		17.9
(-0.7)
A 		1.1
(-3)
A 		44
avr 40
(3) 		23.5
(0.1) 		17
(-1) 		5.7
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 18.2
(-0.2)
P 		37.4
(3)
M 		25.1
(0.9)
P 		9.8
(-1.6)
A 		16.1
(-0.6)
A 		1.7
(-3)
A 		36
B 31.9
(2.8)
P 		32.3
(3)
P 		18.2
(-3)
A 		23.6
(-0.7)
A 		29.9
(2)
A 		18.9
(-2.7)
A 		14
C 31.2
(3)
P 		27.5
(1.7)
A 		22.7
(0.1)
P 		13.7
(-3)
P 		26.3
(1.3)
A 		18.1
(-1.5)
A 		18
avr 27.1
(1.4) 		32.4
(3) 		22
(-0.2) 		15.7
(-2.1) 		24.1
(0.4) 		12.9
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14840
Sequence Type Exemplar sequence
Representative Public ID Y46H3B.1 NCBI
Target Description Y46H3B.1 /REP_DB=WormBase Gene ID /WP=CE24310 /TR=Q9N4W4 /GB=AAF60621.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071099 NCBI Caenorhabditis elegans Y46H3B.1 (Y46H3B.1) mRNA, complete cds. 11/11 A 
SNAP00000024241 ENSEMBL cdna:SNAP chromosome:CEL140:V:1761911:1765100:1 11/11 None
GENEFINDER00000024242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1757047:1765022:1 11/11 None
Y46H3B.1 ENSEMBL cdna:known chromosome:CEL140:V:1760768:1765100:1 gene:Y46H3B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1761625-1765100(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3B.1
Entrez Gene 178657 Entrez gene
SwissProt Q9N4W4 EMBL-EBI
WormBase CE30011 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60621 Hypothetical protein Y46H3B.1 [Caenorhabditis elegans] ref|NP_503500.2| Y46H3B.1 [Caenorhabditis elegans] 0.0
blast AAF60622 Hypothetical protein Y46H3B.2 [Caenorhabditis elegans] ref|NP_503499.2| Y46H3B.2 [Caenorhabditis elegans] 0.0
blast CAE56908 Hypothetical protein CBG24749 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 9.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-4
Pfam IPR001304 EMBL-EBI C-type lectin 9.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 4.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503500.2 1 2-19
Y46H3B.1 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:185742_AT
ctggtggtgccgcgtggaaagcatttgaagaaccctctatcgacgcaactacctacacgg
attgtgcctacatgaacgtgagcgacaagctttggtactcggacgggaattgtaccagta
ccaaacgacaagtactctgccaatatgtgctcccgctgccttcaacccctgaaccgacat
cgaatccatcagacccatgcttctacgacacgactaatttcacatatttcagtggtctgg
ccaatacgaaatgctatcgggtctcctcagacaaaaaacaattcgctgaagctgaaaatc
tctgcctatccgatcatccattattcctgcatactcctaaactgacatcaatcgagacaa
aggaagaggaggagaaagtgcggaccatagtaccgcccgtcagtgacgggatgttctggt
tcgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTGGTGCCGCGTGGAAAGCATT 613 239 941 Antisense
TTGTGCCTACATGAACGTGAGCGAC 153 709 1002 Antisense
TCGGACGGGAATTGTACCAGTACCA 449 597 1039 Antisense
ACCAAACGACAAGTACTCTGCCAAT 376 85 1060 Antisense
CCCTGAACCGACATCGAATCCATCA 548 257 1107 Antisense
CCCATGCTTCTACGACACGACTAAT 18 259 1134 Antisense
ATATTTCAGTGGTCTGGCCAATACG 187 19 1164 Antisense
TACGAAATGCTATCGGGTCTCCTCA 286 649 1185 Antisense
CCTATCCGATCATCCATTATTCCTG 448 267 1245 Antisense
AAGTGCGGACCATAGTACCGCCCGT 409 155 1316 Antisense
AGTGACGGGATGTTCTGGTTCGGGC 89 61 1342 Antisense
Sequence Source Affymetrix Proprietary Database