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[185741_at]

Description C47E12.10 /REP_DB=WormBase Gene ID /WP=CE05454 /TR=Q18675 /GB=CAA93102.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 84.5
(-1.2)
A 		81.6
(-1.4)
A 		55.3
(-3)
A 		154.2
(3)
A 		99
B 119.5
(1.9)
P 		144.1
(3)
A 		76.1
(-0)
A 		9.3
(-3)
A 		135
C 59.4
(0.6)
A 		84.4
(2.6)
A 		89.6
(3)
A 		14.5
(-3)
A 		75
avr 87.8
(0.9) 		103.4
(3) 		73.7
(-1) 		59.3
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 155.1
(3)
A 		18.1
(-3)
A 		55
(-1.4)
A 		74.8
(-0.5)
A 		137.1
(2.2)
P 		78.3
(-0.4)
A 		137
B 86.5
(2.4)
A 		39.2
(-3)
A 		61.8
(-0.4)
A 		91.3
(3)
A 		77.2
(1.4)
M 		70.8
(0.6)
M 		52
C 53.3
(-0.3)
A 		102.3
(3)
A 		11.9
(-3)
A 		78.9
(1.4)
A 		95.3
(2.5)
A 		57.1
(0)
A 		90
avr 98.3
(2.5) 		53.2
(-2) 		42.9
(-3) 		81.7
(0.9) 		103.2
(3) 		68.7
(-0.4) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 30.8
(3)
A 		17.7
(-1.8)
A 		14.5
(-3)
A 		22.6
(-0)
A 		16
B 38.1
(3)
P 		35.6
(2.6)
A 		17.6
(-0.4)
A 		2
(-3)
A 		36
C 19.7
(0.6)
A 		24.3
(1.6)
A 		31.2
(3)
A 		2.4
(-3)
A 		29
avr 29.5
(3) 		25.9
(1.9) 		21.1
(0.5) 		9
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 28.6
(0.8)
A 		6.4
(-3)
A 		12
(-2)
A 		19
(-0.8)
A 		41.4
(3)
P 		19.1
(-0.8)
A 		35
B 30.1
(2.6)
A 		13
(-3)
A 		15
(-2.3)
A 		24.2
(0.7)
A 		31.4
(3)
M 		26.4
(1.4)
M 		18
C 19.7
(0.6)
A 		31.2
(3)
A 		3
(-3)
A 		15.9
(-0.3)
A 		30.8
(2.9)
A 		19.1
(0.4)
A 		28
avr 26.1
(0.9) 		16.9
(-1.3) 		10
(-3) 		19.7
(-0.6) 		34.5
(3) 		21.5
(-0.2) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8908
Sequence Type Exemplar sequence
Representative Public ID C47E12.10 NCBI
Target Description C47E12.10 /REP_DB=WormBase Gene ID /WP=CE05454 /TR=Q18675 /GB=CAA93102.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069394 NCBI Caenorhabditis elegans C47E12.10 (C47E12.10) mRNA, complete cds. 11/11 None
SNAP00000021563 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9972820:9973956:1 11/11 None
GENEFINDER00000021593 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9972820:9973956:1 11/11 None
C47E12.10 ENSEMBL cdna:known chromosome:CEL140:IV:9972820:9973956:1 gene:C47E12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9972825-9973962(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E12.10
Entrez Gene 183556 Entrez gene
SwissProt Q18675 EMBL-EBI
WormBase CE05454 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93102 Hypothetical protein C47E12.10 [Caenorhabditis elegans] ref|NP_501795.1| C47E12.10 [Caenorhabditis elegans] 1.0E-106
blast CAE72527 Hypothetical protein CBG19707 [Caenorhabditis briggsae] 4.0E-48
blast CAE72585 Hypothetical protein CBG19773 [Caenorhabditis briggsae] 7.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 5.4E-13
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.3E-61
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.3E-11
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.3E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501795.1 1 12-34
C47E12.10 1 12-34
SNAP00000021563 1 12-34
GENEFINDER00000021593 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:185741_AT
ttggagagcaacccggagcaggtcctcgagccccgccgcctggatccaatcctggaatgg
ttggaaccgcagatcctaattaccaaacattggcagggctcaacaatgatttagtttttg
gagggggaggcggaggtcccgcaccaccgaaggctccaactgttggaggaaaagctgcaa
ctaatgaccccaactatcagacactcgcggatcttcacaacgaagaaatctttaaagaaa
aaggggcgaaacctcctgagaatgtcgcgaaggctgctacgaacgatcccaactatcaga
ccttagccggactccgcaatgatgagattttcaagccaaaaaacccagctgctcctgttc
aacctccagctcgcgatgtacaaactccatttataaataacaatgatctccgtccaaaac
aaccagttcaaaaaaatgtaaaagcaggaatgtatgatcctaactatcagacactcgccg
gtctcaatcaggatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAGAGCAACCCGGAGCAGGTCC 148 709 377 Antisense
GAACCGCAGATCCTAATTACCAAAC 87 345 440 Antisense
AAAGCTGCAACTAATGACCCCAACT 119 125 547 Antisense
CAACTATCAGACACTCGCGGATCTT 289 189 567 Antisense
GGGGCGAAACCTCCTGAGAATGTCG 457 497 619 Antisense
GTCGCGAAGGCTGCTACGAACGATC 444 475 640 Antisense
TCCCAACTATCAGACCTTAGCCGGA 26 599 663 Antisense
CAAGCCAAAAAACCCAGCTGCTCCT 354 185 708 Antisense
CCAGCTCGCGATGTACAAACTCCAT 515 271 742 Antisense
CAATGATCTCCGTCCAAAACAACCA 22 181 777 Antisense
ACTCGCCGGTCTCAATCAGGATATT 629 99 849 Antisense
Sequence Source Affymetrix Proprietary Database