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[185740_at]

Description F45C12.7 /REP_DB=WormBase Gene ID /WP=CE10448 /TR=O16741 /GB=AAB66206.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 60.6
(-3)
A 		61.1
(-2.9)
A 		88
(-0.1)
A 		117.4
(3)
P 		57
B 13.2
(-3)
A 		103.5
(3)
A 		38.6
(-1.3)
A 		58.9
(0)
A 		90
C 60.5
(-1.3)
A 		41.1
(-3)
A 		49.1
(-2.3)
A 		108
(3)
P 		67
avr 44.8
(-3) 		68.6
(-0.1) 		58.6
(-1.3) 		94.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 61.3
(-1.4)
A 		32.9
(-2.3)
A 		45.5
(-1.9)
A 		12
(-3)
A 		102.5
(-0)
A 		193.8
(3)
P 		182
B 49.1
(-2.6)
A 		65
(-2.2)
A 		61.5
(-2.3)
A 		34.5
(-3)
A 		91.3
(-1.4)
P 		251.6
(3)
P 		217
C 63.2
(-1.7)
A 		54.2
(-2)
A 		12.2
(-3)
A 		79.6
(-1.3)
A 		80.1
(-1.3)
P 		254.7
(3)
P 		243
avr 57.9
(-2.4) 		50.7
(-2.7) 		39.7
(-3) 		42
(-2.9) 		91.3
(-1.4) 		233.4
(3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.1
(2.4)
A 		13.3
(-3)
A 		23
(3)
A 		17.2
(-0.6)
P 		10
B 4.2
(-3)
A 		25.6
(3)
A 		9
(-1.7)
A 		12.6
(-0.6)
A 		21
C 20
(3)
A 		11.8
(-3)
A 		17.1
(0.9)
A 		18.2
(1.7)
P 		8
avr 15.4
(-3) 		16.9
(3) 		16.4
(1) 		16
(-0.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 11.3
(-1.9)
A 		11.7
(-1.8)
A 		9.9
(-2.1)
A 		3
(-3)
A 		30.9
(0.8)
A 		47.2
(3)
P 		44
B 17.1
(-2.4)
A 		21.6
(-2.1)
A 		14.9
(-2.6)
A 		9.1
(-3)
A 		37.1
(-1)
P 		93.8
(3)
P 		85
C 23.4
(-1.5)
A 		16.5
(-2)
A 		3.1
(-3)
A 		16
(-2.1)
A 		25.9
(-1.3)
P 		85.3
(3)
P 		82
avr 17.3
(-2.3) 		16.6
(-2.3) 		9.3
(-3) 		9.4
(-3) 		31.3
(-1) 		75.4
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4238
Sequence Type Exemplar sequence
Representative Public ID F45C12.7 NCBI
Target Description F45C12.7 /REP_DB=WormBase Gene ID /WP=CE10448 /TR=O16741 /GB=AAB66206.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061653 NCBI Caenorhabditis elegans F45C12.7 (F45C12.7) mRNA, complete cds. 11/11 None
SNAP00000033189 ENSEMBL cdna:SNAP chromosome:CEL140:II:1715332:1716436:1 11/11 None
GENEFINDER00000033209 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1713261:1716436:1 11/11 None
F45C12.7 ENSEMBL cdna:known chromosome:CEL140:II:1715165:1716478:1 gene:F45C12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1715330-1716435(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.7
Entrez Gene 173539 Entrez gene
SwissProt O16741 EMBL-EBI
WormBase CE10448 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66206 Hypothetical protein F45C12.7 [Caenorhabditis elegans] ref|NP_494054.1| F45C12.7 [Caenorhabditis elegans] 0.0
blast AAB66210 Hypothetical protein F45C12.12 [Caenorhabditis elegans] ref|NP_494053.1| F45C12.12 [Caenorhabditis elegans] 1.0E-150
blast H88094 protein F39E9.2 [imported] - Caenorhabditis elegans 3.0E-77
blast AAB71029 Hypothetical protein K02E7.9 [Caenorhabditis elegans] ref|NP_493902.1| K02E7.9 [Caenorhabditis elegans] 1.0E-62
blast AAB70996 Hypothetical protein M01D1.3 [Caenorhabditis elegans] ref|NP_493890.1| M01D1.3 [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.5E-29
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-31
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.5E-29
Sequence
Target Sequence 
>C. ELEGANS:185740_AT
cttacgcccaattgttgccaggagaagtgctcggataacaaagtggctcttacgccaaaa
aagagccccggtcagaaagtcccggagcacaagcctactgatcatgaaattggtagtgat
gtttcctatgagaaattgttcgcgccatccaaccgacacgatgcggtgctcttgatcggg
gagaagaagcttcatgtgagcaaggcgttcctctcctaccactcggactatttctccgat
ctgttcgctgataagatcaatgaggagattaggcttgaagatgtgtcctacgaggatttc
ggccttctcatgagcatcatccaccccgaaacaggctttgtcaatgatcaaaacgctgag
aagcttctccatctaggaaatcggttcaaaatttcatgtgtcattcaccaggtcgaacac
cacttcactcgtggaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTACGCCCAATTGTTGCCAGGAGA 574 221 343 Antisense
GCCCCGGTCAGAAAGTCCCGGAGCA 193 281 407 Antisense
CGGAGCACAAGCCTACTGATCATGA 584 243 425 Antisense
ATGAGAAATTGTTCGCGCCATCCAA 588 45 470 Antisense
ATCCAACCGACACGATGCGGTGCTC 263 41 489 Antisense
TATTTCTCCGATCTGTTCGCTGATA 270 661 571 Antisense
ATTTCGGCCTTCTCATGAGCATCAT 353 17 638 Antisense
CCACCCCGAAACAGGCTTTGTCAAT 89 273 663 Antisense
GAAGCTTCTCCATCTAGGAAATCGG 25 343 702 Antisense
GTCATTCACCAGGTCGAACACCACT 83 469 742 Antisense
CGAACACCACTTCACTCGTGGAACC 237 241 756 Antisense
Sequence Source Affymetrix Proprietary Database