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[185739_at]

Description C24H10.2 /REP_DB=WormBase Gene ID /WP=CE04067 /TR=Q18134 /GB=AAA81452.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 71      6grp_total > 80      4grp_total > 08      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 324.3
(-3)
P 		355
(-2.1)
P 		375.2
(-1.6)
P 		538.6
(3)
P 		214
B 365.1
(-3)
P 		383
(-1.9)
P 		369.2
(-2.8)
P 		466.1
(3)
P 		101
C 407.9
(-2.2)
P 		393.1
(-3)
P 		501.6
(3)
P 		474
(1.5)
P 		109
avr 365.8
(-3) 		377
(-2.5) 		415.3
(-0.7) 		492.9
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 288.3
(-3)
P 		395.8
(1.1)
P 		333.2
(-1.3)
P 		444.1
(3)
P 		314.8
(-2)
P 		313
(-2)
P 		156
B 272.3
(-2)
P 		256.2
(-2.5)
P 		237.4
(-3)
P 		445.7
(3)
P 		365.2
(0.7)
P 		289.7
(-1.5)
P 		208
C 221.6
(-3)
P 		265.1
(-1)
P 		351.8
(3)
P 		343.6
(2.6)
P 		296.7
(0.5)
P 		289.1
(0.1)
P 		130
avr 260.7
(-3) 		305.7
(-1.2) 		307.5
(-1.1) 		411.1
(3) 		325.6
(-0.4) 		297.3
(-1.5) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 118.1
(3)
P 		77.1
(-3)
P 		98.1
(0.1)
P 		78.8
(-2.8)
P 		41
B 116.4
(3)
P 		94.6
(-1.2)
P 		85.6
(-3)
P 		99.3
(-0.3)
P 		31
C 135
(0.5)
P 		113
(-0.9)
P 		174.8
(3)
P 		79.9
(-3)
P 		95
avr 123.2
(3) 		94.9
(-1.6) 		119.5
(2.4) 		86
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 53.1
(-3)
P 		140.8
(3)
P 		72.6
(-1.7)
P 		112.6
(1.1)
P 		95
(-0.1)
P 		76.2
(-1.4)
P 		88
B 94.8
(-0.5)
P 		85.3
(-1.2)
P 		57.7
(-3)
P 		118
(1)
P 		148.4
(3)
P 		108
(0.3)
P 		91
C 82.1
(-0.2)
P 		80.9
(-0.4)
P 		89.5
(1.4)
P 		69.1
(-3)
P 		96
(2.8)
P 		96.8
(3)
P 		28
avr 76.7
(-2.5) 		102.3
(1.4) 		73.3
(-3) 		99.9
(1) 		113.1
(3) 		93.7
(0.1) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17131
Sequence Type Exemplar sequence
Representative Public ID C24H10.2 NCBI
Target Description C24H10.2 /REP_DB=WormBase Gene ID /WP=CE04067 /TR=Q18134 /GB=AAA81452.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076461 NCBI Caenorhabditis elegans C24H10.2 (C24H10.2) mRNA, complete cds. 11/11 None
SNAP00000004803 ENSEMBL cdna:SNAP chromosome:CEL140:X:5064611:5066262:1 11/11 None
GENEFINDER00000004806 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5064611:5066262:1 11/11 None
C24H10.2 ENSEMBL cdna:known chromosome:CEL140:X:5064611:5066262:1 gene:C24H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5064611-5066263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H10.2
Entrez Gene 182856 Entrez gene
SwissProt Q18134 EMBL-EBI
WormBase CE04067 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81452 Hypothetical protein C24H10.2 [Caenorhabditis elegans] ref|NP_508862.1| C24H10.2 [Caenorhabditis elegans] 1.0E-151
blast AAA81452 Hypothetical protein C24H10.2 [Caenorhabditis elegans] ref|NP_508862.1| C24H10.2 [Caenorhabditis elegans] 1.0E-143
blast CAE68687 Hypothetical protein CBG14601 [Caenorhabditis briggsae] 2.0E-36
blast CAE68687 Hypothetical protein CBG14601 [Caenorhabditis briggsae] 5.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185739_AT
gttgccacaagactatgcgcgcattgaagaagcaagagcctcgcttgaccaacttgttcg
caaatgtcaccaaatgactccaaaaatcatcccacccaacgacgcgaaaaatttccttca
aaaccttcgacggatcgatgtgcgttgcagtgcgttgtacccaaggccaccggcacctgg
agacaaggagaaaaagagctaccgaatgtgtccatgctttgagccggaaattgaggacat
tgaacgtctcgttgttcactatgacggtgttttccaagccatcaagtatttccacaatct
tgacctcttcatggagcaccaacgagctgagaagagaaatcttttcggattggactgttc
ggatgatgaggatgatcattttgaagatgaagaagagtatgagcatgagtgtcgtcatca
ctgtacttgtaacaatgaggatgaagaagatgtgaagatgggacaagataatgatcgtaa
gaaactcgagagcaaaatgatcaaaaaattcgaacagaaaggtttctattacaatgcgga
gaagcagcgagcacttctacgggagtctctccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCACAAGACTATGCGCGCATT 322 441 372 Antisense
GAAGAAGCAAGAGCCTCGCTTGACC 176 341 397 Antisense
TCGCTTGACCAACTTGTTCGCAAAT 682 599 412 Antisense
ATGTGCGTTGCAGTGCGTTGTACCC 25 49 509 Antisense
GAGCTACCGAATGTGTCCATGCTTT 59 387 567 Antisense
GAACGTCTCGTTGTTCACTATGACG 621 347 613 Antisense
TATGACGGTGTTTTCCAAGCCATCA 476 655 631 Antisense
AGTATTTCCACAATCTTGACCTCTT 250 63 656 Antisense
TGACCTCTTCATGGAGCACCAACGA 689 569 672 Antisense
GTGTCGTCATCACTGTACTTGTAAC 514 485 780 Antisense
GCACTTCTACGGGAGTCTCTCCAAA 132 317 922 Antisense
Sequence Source Affymetrix Proprietary Database