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[185737_at]

Description Y102A5A.1 /REP_DB=WormBase Gene ID /WP=CE20378 /TR=Q9XTJ0 /GB=CAA19440.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 43      6grp_total > 27      4grp_total > 52      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 206.4
(2.9)
P 		208.4
(3)
P 		172.8
(0.6)
P 		120.6
(-3)
A 		88
B 181.7
(0.7)
P 		221.5
(3)
P 		193.6
(1.4)
P 		119.4
(-3)
P 		102
C 216
(3)
P 		199.7
(2)
P 		130.7
(-2.1)
P 		115.5
(-3)
P 		101
avr 201.4
(2.4) 		209.9
(3) 		165.7
(0.1) 		118.5
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 138.4
(3)
M 		119.2
(1.2)
P 		75.1
(-3)
M 		96.7
(-1)
A 		114.5
(0.7)
A 		112.1
(0.5)
M 		63
B 130.4
(3)
P 		127.9
(2.8)
P 		77.7
(-1.3)
A 		99.1
(0.5)
P 		56.7
(-3)
A 		119.2
(2.1)
P 		74
C 196.1
(3)
P 		114.4
(-0.2)
P 		116.8
(-0.1)
A 		95.1
(-1)
A 		44.9
(-3)
A 		102.2
(-0.7)
P 		151
avr 155
(3) 		120.5
(0.5) 		89.9
(-1.7) 		97
(-1.2) 		72
(-3) 		111.2
(-0.2) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 75.2
(3)
P 		45.2
(-0.1)
P 		45.2
(-0.1)
P 		17.7
(-3)
A 		58
B 57.9
(3)
P 		54.7
(2.4)
P 		44.9
(0.6)
P 		25.4
(-3)
P 		33
C 71.5
(3)
P 		57.4
(1.4)
P 		45.5
(0)
P 		19.5
(-3)
P 		52
avr 68.2
(3) 		52.4
(1) 		45.2
(0.1) 		20.9
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 25.5
(-0.9)
M 		42.4
(3)
P 		16.4
(-3)
M 		24.5
(-1.1)
A 		34.5
(1.2)
A 		27.3
(-0.5)
M 		26
B 45.4
(3)
P 		42.6
(2.4)
P 		18.9
(-3)
A 		26.2
(-1.3)
P 		23
(-2.1)
A 		44.4
(2.8)
P 		27
C 72.7
(3)
P 		34.9
(-0.9)
P 		29.7
(-1.4)
A 		19.1
(-2.5)
A 		14.5
(-3)
A 		34.2
(-1)
P 		58
avr 47.9
(3) 		40
(1.2) 		21.7
(-3) 		23.3
(-2.6) 		24
(-2.5) 		35.3
(0.1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12572
Sequence Type Exemplar sequence
Representative Public ID Y102A5A.1 NCBI
Target Description Y102A5A.1 /REP_DB=WormBase Gene ID /WP=CE20378 /TR=Q9XTJ0 /GB=CAA19440.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074843 NCBI Caenorhabditis elegans Y102A5A.1 (Y102A5A.1) mRNA, complete cds. 11/11 None
SNAP00000028343 ENSEMBL cdna:SNAP chromosome:CEL140:V:16814374:16816664:1 10/11 None
Y102A5A.1 ENSEMBL cdna:known chromosome:CEL140:V:16805455:16817142:1 gene:Y102A5A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028357 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16805454-16816664(+) 99.84 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5A.1
Entrez Gene 180125 Entrez gene
SwissProt Q9XTJ0 EMBL-EBI
WormBase CE20378 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20501_AT TIP120 protein, putative at
ATH1-121501:267269_AT TIP120 protein, putative at
CANINE_2:CFA.1566.1.A1_AT similar to TIP120 protein cfa
CANINE_2:CFAAFFX.1565.1.S1_S_AT similar to TIP120 protein cfa
DROSOPHILA_2:1641608_AT dm
DROSGENOME1:152136_AT dm
CHICKEN:GGAAFFX.6212.1.S1_AT similar to TIP120 protein gga
HG-U133_PLUS_2:208838_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A_2:208838_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A:208838_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:208839_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A:208839_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A_2:208839_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:207483_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A:207483_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A_2:207483_S_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:AA127605_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:RC_AA236485_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:H01766_S_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:RC_AA491234_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBB:RC_R49406_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBD:RC_R46045_AT cullin-associated and neddylation-dissociated 1 hs
U133_X3P:G8924259_3P_S_AT cullin-associated and neddylation-dissociated 1 hs
U133_X3P:G12053130_3P_A_AT cullin-associated and neddylation-dissociated 1 hs
U133_X3P:HS.200073.0.A1_3P_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:239771_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133B:239771_AT cullin-associated and neddylation-dissociated 1 hs
HG-U95AV2:32196_AT cullin-associated and neddylation-dissociated 1 hs
HG-U95D:68781_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:1556318_S_AT Cullin-associated and neddylation-dissociated 1 hs
U133_X3P:1556318_3P_S_AT Cullin-associated and neddylation-dissociated 1 hs
U133_X3P:HS2.397035.1.A1_3P_AT Cullin-associated and neddylation-dissociated 1 hs
U133_X3P:HS2.397035.1.A1_3P_S_AT Cullin-associated and neddylation-dissociated 1 hs
MG-U74AV2:99338_AT cullin associated and neddylation disassociated 1 mm
MG-U74BV2:106255_AT cullin associated and neddylation disassociated 1 mm
MG-U74BV2:114221_AT cullin associated and neddylation disassociated 1 mm
MG-U74BV2:111628_AT cullin associated and neddylation disassociated 1 mm
MG-U74CV2:138798_AT cullin associated and neddylation disassociated 1 mm
MG-U74CV2:170409_I_AT cullin associated and neddylation disassociated 1 mm
MOE430A:1428648_AT cullin associated and neddylation disassociated 1 mm
MOUSE430A_2:1428648_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1428648_AT cullin associated and neddylation disassociated 1 mm
MOE430A:1428649_AT cullin associated and neddylation disassociated 1 mm
MOUSE430A_2:1428649_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1428649_AT cullin associated and neddylation disassociated 1 mm
MOE430B:1435781_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1435781_AT cullin associated and neddylation disassociated 1 mm
MOE430B:1455751_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1455751_AT cullin associated and neddylation disassociated 1 mm
MU19KSUBB:TC31430_AT cullin associated and neddylation disassociated 1 mm
MU11KSUBA:R75103_RC_AT MKIAA0829 protein mm
RG-U34A:E12829CDS_AT TBP-interacting protein 120A rn
RG-U34A:RC_AI230395_AT TBP-interacting protein 120A rn
RAE230A:1367972_AT TBP-interacting protein 120A rn
RAT230_2:1367972_AT TBP-interacting protein 120A rn
Protein Similarities
Method ID Description E-Value
blast CAB04744 Hypothetical protein Y102A5A.1 [Caenorhabditis elegans] emb|CAA19440.1| Hypothetical protein Y102A5A.1 [Caenorhabditis elegans] ref|NP_507244.1| Y102A5A.1 [Caenorhabditis elegans] 0.0
blast CAE56254 Hypothetical protein CBG23895 [Caenorhabditis briggsae] 0.0
blast XP_393409 PREDICTED: similar to mKIAA0829 protein [Apis mellifera] 0.0
blast CAB04744 Hypothetical protein Y102A5A.1 [Caenorhabditis elegans] emb|CAA19440.1| Hypothetical protein Y102A5A.1 [Caenorhabditis elegans] ref|NP_507244.1| Y102A5A.1 [Caenorhabditis elegans] 1.0E-98
blast XP_393409 PREDICTED: similar to mKIAA0829 protein [Apis mellifera] 2.0E-40
blast AAH71146 MGC83065 protein [Xenopus laevis] 4.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR007723 EMBL-EBI TBP-interacting 120 1.0E-126
Pfam IPR007723 EMBL-EBI TBP-interacting 120 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185737_AT
caattctgctgctcacaacaagccggctcttgtcagagatttgcttcctgatctgcttcc
agctgtctacgaagagacaaaacttcgtaaggagcttatcaaagaagtcgagatgggacc
attcaagcatcaagtcgacgagggtcttgatctcagaaaatgcgcttttgagtgcatgtt
caccctcttggaaagctgcgttgacaagatagacatcactcaattctcgtcagtaatgga
agttggattatccgatcagaatcatgacgtcaaacttctcaactacttgaccctccaacg
tgtcgctaatcttgctccaggacaagttctccaacgaatcgatcgtgtctgtgaaccgtt
gaagactcaattgaacgttcgtccacgtggaaatgctgttaagcaggaagttgagaagct
tgaagagctgaagaaggctgtcattcgtgttgtatacggattgaagttgaagctgccaga
agttgagagaaatccacaatttttggatctttacaacactatcaaacataccaaagagtt
ggaggctctcgccaacgatgtgctcaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCTGCTGCTCACAACAAGCCG 24 181 3222 Antisense
CAGAGATTTGCTTCCTGATCTGCTT 22 207 3255 Antisense
ATCTGCTTCCAGCTGTCTACGAAGA 452 33 3272 Antisense
AGTCGACGAGGGTCTTGATCTCAGA 227 59 3354 Antisense
GCGCTTTTGAGTGCATGTTCACCCT 508 287 3383 Antisense
GACATCACTCAATTCTCGTCAGTAA 10 371 3433 Antisense
TCAAACTTCTCAACTACTTGACCCT 75 629 3491 Antisense
TGTCGCTAATCTTGCTCCAGGACAA 629 555 3522 Antisense
GGACAAGTTCTCCAACGAATCGATC 669 525 3541 Antisense
ATCGATCGTGTCTGTGAACCGTTGA 298 35 3559 Antisense
CTCTCGCCAACGATGTGCTCAAGGA 499 231 3767 Antisense
Sequence Source Affymetrix Proprietary Database