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[185735_at]

Description F01E11.3 /REP_DB=WormBase Gene ID /WP=CE04329 /TR=Q19080 /GB=AAA83570.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 67.3
(0.7)
M 		37.6
(-1.2)
A 		8.6
(-3)
A 		103.2
(3)
P 		95
B 85.4
(3)
A 		30.8
(-3)
A 		44.8
(-1.5)
A 		34.9
(-2.5)
A 		55
C 97
(3)
P 		30.2
(-3)
A 		32.7
(-2.8)
A 		81
(1.6)
A 		67
avr 83.2
(3) 		32.9
(-2.5) 		28.7
(-3) 		73
(1.9) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 35.5
(0.7)
A 		53.8
(3)
A 		49.1
(2.4)
A 		6.7
(-3)
A 		44.8
(1.9)
A 		15.1
(-1.9)
A 		47
B 56.9
(1.4)
A 		57.8
(1.5)
A 		69.2
(3)
A 		35.9
(-1.4)
A 		54.8
(1.1)
A 		23.3
(-3)
A 		46
C 92.9
(3)
P 		92.2
(2.9)
P 		75.9
(1.6)
A 		39.2
(-1.3)
A 		20.3
(-2.9)
A 		18.8
(-3)
A 		74
avr 61.8
(2.3) 		67.9
(3) 		64.7
(2.6) 		27.3
(-2) 		40
(-0.4) 		19.1
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 24.5
(3)
M 		8.2
(-1.4)
A 		2.2
(-3)
A 		15.1
(0.5)
P 		22
B 27.2
(3)
A 		7.6
(-2.9)
A 		10.4
(-2.1)
A 		7.4
(-3)
A 		20
C 32.1
(3)
P 		8.7
(-3)
A 		11.4
(-2.3)
A 		13.7
(-1.7)
A 		23
avr 27.9
(3) 		8.2
(-2.9) 		8
(-3) 		12.1
(-1.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.6
(-1.3)
A 		19.1
(3)
A 		10.7
(0.1)
A 		1.7
(-3)
A 		13.5
(1.1)
A 		3.7
(-2.3)
A 		17
B 19.8
(1.9)
A 		19.2
(1.6)
A 		16.8
(0.6)
A 		9.5
(-2.6)
A 		22.3
(3)
A 		8.7
(-3)
A 		14
C 34.4
(3)
P 		28.1
(1.7)
P 		19.3
(-0.2)
A 		7.9
(-2.7)
A 		6.6
(-2.9)
A 		6.3
(-3)
A 		28
avr 20.3
(2.3) 		22.1
(3) 		15.6
(0.5) 		6.4
(-2.9) 		14.1
(-0) 		6.2
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16662
Sequence Type Exemplar sequence
Representative Public ID F01E11.3 NCBI
Target Description F01E11.3 /REP_DB=WormBase Gene ID /WP=CE04329 /TR=Q19080 /GB=AAA83570.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076779(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076779 NCBI Caenorhabditis elegans F01E11.3 (F01E11.3) mRNA, complete cds. 10/11 None
GENEFINDER00000033569 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6967453:6976610:1 10/11 None
F01E11.3 ENSEMBL cdna:known chromosome:CEL140:X:6967667:6983052:1 gene:F01E11.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033561 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6971530-6974813(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01E11.3
Entrez Gene 184061 Entrez gene
SwissProt Q5WRR7 EMBL-EBI
WormBase CE37625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28357 Hypothetical protein F01E11.3 [Caenorhabditis elegans] ref|NP_509180.2| F01E11.3 [Caenorhabditis elegans] 0.0
blast T15938 hypothetical protein F01E11.2 - Caenorhabditis elegans 1.0E-109
blast AAV28357 Hypothetical protein F01E11.3 [Caenorhabditis elegans] ref|NP_509180.2| F01E11.3 [Caenorhabditis elegans] 1.0E-92
blast T15937 hypothetical protein F01E11.3 - Caenorhabditis elegans 4.0E-62
blast T15937 hypothetical protein F01E11.3 - Caenorhabditis elegans 1.0E-59
blast CAE65825 Hypothetical protein CBG10946 [Caenorhabditis briggsae] 1.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509180.2 1 95-117
F01E11.3 1 95-117
GENEFINDER00000033569 1 191-213
Sequence
Target Sequence 
>C. ELEGANS:185735_AT
aatacacattcggttgttgctgatgatttgacactgctcactatttcacaaatttctgct
actttacgctatccgcttggaagaataatatctgatagagatatcgaaaacgaaagttca
acaaaatggtggtttttaattggagttattggaaccggtgtgatcattataatgattgga
tggttttgcttgtttttgtttttcaatacttgtggttatatgtatggcactgaagttgga
gacgatatgacaagagctcaaagagccagtatgaagaagcagttggtcattaatccattg
ccgatgcattgtgagccagctgccgagcaactgaacgacgtgctcccatctgacaatccg
aacgttgtggctgccaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACACATTCGGTTGTTGCTGATG 408 171 61 Antisense
GTTGCTGATGATTTGACACTGCTCA 395 439 76 Antisense
GACACTGCTCACTATTTCACAAATT 579 367 90 Antisense
AAATTTCTGCTACTTTACGCTATCC 692 115 110 Antisense
TACTTTACGCTATCCGCTTGGAAGA 594 643 120 Antisense
GTTATTGGAACCGGTGTGATCATTA 468 447 205 Antisense
GATTGGATGGTTTTGCTTGTTTTTG 462 435 234 Antisense
GTTGGTCATTAATCCATTGCCGATG 106 437 342 Antisense
ATTGCCGATGCATTGTGAGCCAGCT 269 7 357 Antisense
AGCTGCCGAGCAACTGAACGACGTG 350 79 378 Antisense
ATCCGAACGTTGTGGCTGCCAAGAA 401 37 416 Antisense
Sequence Source Affymetrix Proprietary Database