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[185734_s_at]

Description T24A6.16 /REP_DB=WormBase Gene ID /WP=CE14154 /TR=O61952 /GB=AAC17803.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 10.2
(-2.6)
A 		6.9
(-3)
A 		11.4
(-2.4)
A 		51.7
(3)
A 		45
B 5.8
(-3)
A 		11.6
(-0.9)
A 		22.4
(3)
A 		10.6
(-1.3)
A 		17
C 3.2
(-3)
A 		17.4
(-1.8)
A 		4.8
(-2.9)
A 		72.6
(3)
A 		69
avr 6.4
(-3) 		12
(-2.1) 		12.9
(-2) 		45
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.9
(3)
A 		1.4
(-3)
A 		8.4
(1.4)
A 		7.7
(1)
A 		9.3
(2)
A 		5.6
(-0.3)
A 		10
B 4.9
(-2.1)
A 		2.4
(-2.9)
A 		13.5
(0.5)
A 		2
(-3)
A 		19.5
(2.4)
A 		21.6
(3)
A 		20
C 1.6
(-3)
A 		2.3
(-2.8)
A 		3.6
(-2.6)
A 		2.6
(-2.8)
A 		4.7
(-2.3)
A 		28.9
(3)
A 		27
avr 5.8
(-1.6) 		2
(-3) 		8.5
(-0.7) 		4.1
(-2.2) 		11.2
(0.3) 		18.7
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-0.8)
A 		1.5
(-3)
A 		3
(-1.5)
A 		7.6
(3)
A 		6
B 1.8
(-3)
A 		2.9
(-1.1)
A 		5.2
(3)
A 		2.2
(-2.3)
A 		3
C 1
(-3)
A 		5
(-0.9)
A 		1.7
(-2.6)
A 		12.2
(3)
A 		11
avr 2.2
(-3) 		3.1
(-1.9) 		3.3
(-1.7) 		7.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2
(0.9)
A 		0.5
(-3)
A 		1.8
(0.4)
A 		2
(0.9)
A 		2.8
(3)
A 		1.4
(-0.7)
A 		2
B 1.7
(-2)
A 		0.8
(-2.8)
A 		3.3
(-0.8)
A 		0.5
(-3)
A 		7.9
(2.9)
A 		8
(3)
A 		8
C 0.6
(-2.9)
A 		0.7
(-2.9)
A 		0.9
(-2.7)
A 		0.5
(-3)
A 		1.5
(-2.3)
A 		9.7
(3)
A 		9
avr 1.4
(-2.3) 		0.7
(-3) 		2
(-1.6) 		1
(-2.7) 		4.1
(0.6) 		6.4
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185734_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15224
Sequence Type Exemplar sequence
Representative Public ID T24A6.16 NCBI
Target Description T24A6.16 /REP_DB=WormBase Gene ID /WP=CE14154 /TR=O61952 /GB=AAC17803.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071604(11), NM_071601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071604 NCBI Caenorhabditis elegans F40C5.1 (F40C5.1) mRNA, complete cds. 11/11 None
NM_071601 NCBI Caenorhabditis elegans T24A6.16 (T24A6.16) mRNA, complete cds. 11/11 None
GENEFINDER00000026436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3571021:3573982:1 10/11 None
T24A6.16 ENSEMBL cdna:known chromosome:CEL140:V:3561285:3562744:-1 gene:T24A6.16 11/11 None
F40C5.1 ENSEMBL cdna:known chromosome:CEL140:V:3572538:3573982:1 gene:F40C5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026431 7/11 Cross Hyb Matching Probes None
SNAP00000027434 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3572537-3573982(+) 99.77 99.77
chrV:3561284-3562744(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T24A6.16
F40C5.1
Entrez Gene 185514 Entrez gene
188833 Entrez gene
SwissProt Q9N5U3 EMBL-EBI
O61952 EMBL-EBI
WormBase CE23709 Wormbase
CE39033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39797 Hypothetical protein F40C5.1 [Caenorhabditis elegans] ref|NP_504005.1| F40C5.1 [Caenorhabditis elegans] 0.0
blast AAC17803 Hypothetical protein T24A6.16 [Caenorhabditis elegans] 1.0E-174
blast NP_504002 T24A6.16 [Caenorhabditis elegans] 1.0E-167
blast AAC17803 Hypothetical protein T24A6.16 [Caenorhabditis elegans] 1.0E-165
blast AAF39797 Hypothetical protein F40C5.1 [Caenorhabditis elegans] ref|NP_504005.1| F40C5.1 [Caenorhabditis elegans] 1.0E-162
blast NP_504002 T24A6.16 [Caenorhabditis elegans] 1.0E-160
blast AAF39797 Hypothetical protein F40C5.1 [Caenorhabditis elegans] ref|NP_504005.1| F40C5.1 [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 2.3E-76
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.8E-56
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185734_S_AT
tagtgacacctgggcaacaagtaacagaagctgcaccaaagaattcaactttttgaatcc
atcagaagtcttgaaaattgataagaacacggttcggtttgctttcgtacgggatccgtt
tcgccgctttgtgtcattatacttgaataaatgcgttaacaaaaacgagtgctatgattg
tggaagcgatatgcggaattgcaacttccatcagggaatcgagaaatgggagctgctggc
aatgggctcagataccgaagagagagtttcatcggctgcaagactcgccgacattttaag
aaaacaaggagtccgaggttctctagtagagaaaatccacaaaaatattttaagtatgtt
tttaaaagacctacaaaactgcggagtccgtttttttgtagctgccgaaaccgcccattc
tactcacaaatcgagcaaccgctatgaagctgaacggcaggttcgagaagatccgtttgt
tcgtgattacctgcacaaaatttatttattcgattatcttgtgtttccatttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTGACACCTGGGCAACAAGTAAC 27 655 282 Antisense
TCGGTTTGCTTTCGTACGGGATCCG 395 583 375 Antisense
TTTCGCCGCTTTGTGTCATTATACT 542 669 400 Antisense
GCTGCTGGCAATGGGCTCAGATACC 263 297 513 Antisense
GAGAGAGTTTCATCGGCTGCAAGAC 48 395 541 Antisense
GCTGCAAGACTCGCCGACATTTTAA 196 297 556 Antisense
AAGGAGTCCGAGGTTCTCTAGTAGA 201 159 587 Antisense
GACCTACAAAACTGCGGAGTCCGTT 133 381 649 Antisense
TCTACTCACAAATCGAGCAACCGCT 148 613 700 Antisense
GGCAGGTTCGAGAAGATCCGTTTGT 687 515 737 Antisense
TCGATTATCTTGTGTTTCCATTTGA 177 603 791 Antisense
Sequence Source Affymetrix Proprietary Database