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[185733_at]

Description F46E10.2 /REP_DB=WormBase Gene ID /WP=CE20813 /TR=Q9UAV7 /GB=AAD14713.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 49.4
(-0.3)
A 		4.2
(-3)
A 		61.6
(0.4)
A 		105.1
(3)
P 		101
B 66
(3)
A 		20
(-3)
A 		62.9
(2.6)
A 		51.7
(1.1)
A 		46
C 41.3
(-3)
A 		76
(0.2)
A 		73.9
(0)
A 		105.8
(3)
A 		65
avr 52.2
(-0.9) 		33.4
(-3) 		66.1
(0.6) 		87.5
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 136.8
(-0.2)
P 		51.5
(-2.4)
A 		53.7
(-2.3)
A 		27.6
(-3)
A 		58.2
(-2.2)
M 		259.8
(3)
P 		232
B 162
(-0.6)
P 		24.8
(-3)
A 		65.3
(-2.3)
A 		33.7
(-2.8)
A 		104.7
(-1.6)
P 		368.2
(3)
P 		343
C 148.7
(-0.5)
P 		40.6
(-3)
A 		61.9
(-2.5)
A 		74.6
(-2.2)
A 		89.6
(-1.9)
P 		299.7
(3)
P 		259
avr 149.2
(-0.6) 		39
(-3) 		60.3
(-2.5) 		45.3
(-2.9) 		84.2
(-2) 		309.2
(3) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 18
(3)
A 		0.9
(-3)
A 		16.1
(2.3)
A 		15.4
(2.1)
P 		17
B 21
(3)
A 		4.9
(-3)
A 		14.6
(0.6)
A 		11
(-0.7)
A 		16
C 13.7
(-3)
A 		21.9
(1.1)
A 		25.8
(3)
A 		17.8
(-1)
A 		12
avr 17.6
(2.3) 		9.2
(-3) 		18.8
(3) 		14.7
(0.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 25.2
(-1.1)
P 		18.3
(-1.8)
A 		11.7
(-2.5)
A 		7
(-3)
A 		17.6
(-1.9)
M 		63.2
(3)
P 		56
B 56.4
(-0.8)
P 		8.3
(-3)
A 		15.8
(-2.7)
A 		8.9
(-3)
A 		42.6
(-1.4)
P 		137.3
(3)
P 		129
C 55.1
(-0.1)
P 		12.4
(-3)
A 		15.7
(-2.8)
A 		15
(-2.8)
A 		29
(-1.9)
P 		100.3
(3)
P 		88
avr 45.6
(-0.6) 		13
(-2.8) 		14.4
(-2.7) 		10.3
(-3) 		29.7
(-1.7) 		100.3
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11586
Sequence Type Exemplar sequence
Representative Public ID F46E10.2 NCBI
Target Description F46E10.2 /REP_DB=WormBase Gene ID /WP=CE20813 /TR=Q9UAV7 /GB=AAD14713.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072257 NCBI Caenorhabditis elegans F46E10.2 (F46E10.2) mRNA, complete cds. 11/11 None
SNAP00000002133 ENSEMBL cdna:SNAP chromosome:CEL140:V:6523029:6523542:1 11/11 None
GENEFINDER00000002142 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6523029:6524572:1 11/11 None
F46E10.2.1 ENSEMBL cdna:known chromosome:CEL140:V:6523025:6523666:1 gene:F46E10.2 11/11 None
F46E10.2.2 ENSEMBL cdna:known chromosome:CEL140:V:6523029:6523621:1 gene:F46E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6523028-6523542(+) 90.48 100.0
Public Domain and Genome References
Gene Title
Ensembl F46E10.2
Entrez Gene 179042 Entrez gene
SwissProt Q9UAV7 EMBL-EBI
WormBase CE20813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14713 Hypothetical protein F46E10.2 [Caenorhabditis elegans] ref|NP_504658.1| F46E10.2 [Caenorhabditis elegans] gb|AAG49391.1| 5H1 [Caenorhabditis elegans] 5.0E-15
blast AAD14713 Hypothetical protein F46E10.2 [Caenorhabditis elegans] ref|NP_504658.1| F46E10.2 [Caenorhabditis elegans] gb|AAG49391.1| 5H1 [Caenorhabditis elegans] 6.0E-12
blast CAE71900 Hypothetical protein CBG18958 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504658.1 1 4-26
F46E10.2.1 1 4-26
F46E10.2.2 1 4-26
SNAP00000002133 1 4-26
GENEFINDER00000002142 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:185733_AT
gacacgtctctatgtcattgctcttcttgtgctctttacgagccacgccttcgcggtgac
tagttggtcttcggtatccaccaatgggctcaacacggtaggatcctatggaaccgtcgg
aggagcaggcctcggaggcccaggaattggtggcccagggcttggtggcccaggaatcgg
tggaccaggacttggcggacctggagtcggaggaggaccaggtgccttcggtccttatgg
aagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGTCTCTATGTCATTGCTCTT 651 367 15 Antisense
TCTTGTGCTCTTTACGAGCCACGCC 381 619 39 Antisense
GACTAGTTGGTCTTCGGTATCCACC 29 373 72 Antisense
AATGGGCTCAACACGGTAGGATCCT 356 161 97 Antisense
GCCTCGGAGGCCCAGGAATTGGTGG 268 259 143 Antisense
AATTGGTGGCCCAGGGCTTGGTGGC 295 155 159 Antisense
TTGGTGGCCCAGGAATCGGTGGACC 533 707 176 Antisense
GAATCGGTGGACCAGGACTTGGCGG 512 329 188 Antisense
ACTTGGCGGACCTGGAGTCGGAGGA 185 95 204 Antisense
GAGGAGGACCAGGTGCCTTCGGTCC 566 403 224 Antisense
GGTGCCTTCGGTCCTTATGGAAGAT 76 503 235 Antisense
Sequence Source Affymetrix Proprietary Database