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[185732_at]

Description W08F4.11 /REP_DB=WormBase Gene ID /WP=CE14732 /TR=O02113 /GB=AAC71175.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 21      6grp_highest_nonorm > 90      6grp_total > 30      4grp_total > 10      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 29
(-3)
A 		51.6
(-1.3)
A 		58.6
(-0.8)
A 		110
(3)
P 		81
B 72.1
(-0.3)
P 		63.2
(-1.3)
P 		47.2
(-3)
A 		103.4
(3)
P 		56
C 53.8
(-2.6)
P 		106.2
(-1.1)
P 		41.1
(-3)
A 		243.2
(3)
P 		202
avr 51.6
(-2.8) 		73.7
(-1.6) 		49
(-3) 		152.2
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 72.1
(1.3)
P 		58.4
(-1.7)
P 		56.9
(-2)
P 		79.7
(3)
P 		56
(-2.2)
P 		52.5
(-3)
P 		27
B 56.8
(-2.4)
P 		91.5
(3)
P 		77.9
(0.9)
P 		80.7
(1.3)
P 		58.8
(-2.1)
P 		52.7
(-3)
P 		39
C 74.8
(0.5)
P 		96.1
(2.5)
P 		101.8
(3)
P 		78.9
(0.9)
P 		39.4
(-2.8)
P 		36.9
(-3)
P 		65
avr 67.9
(0.6) 		82
(3) 		78.9
(2.5) 		79.8
(2.6) 		51.4
(-2.3) 		47.4
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 10.6
(-3)
A 		11.2
(-2.3)
A 		15.3
(2.1)
A 		16.1
(3)
P 		6
B 23
(3)
P 		15.6
(-0.7)
P 		10.9
(-3)
A 		22
(2.5)
P 		12
C 17.8
(-2.2)
P 		30.5
(0.6)
P 		14.3
(-3)
A 		41
(3)
P 		27
avr 17.1
(-1.3) 		19.1
(-0.4) 		13.5
(-3) 		26.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 13.3
(-2.4)
P 		20.8
(3)
P 		12.4
(-3)
P 		20.2
(2.6)
P 		16.9
(0.2)
P 		12.8
(-2.7)
P 		8
B 19.8
(-2.5)
P 		30.4
(3)
P 		18.9
(-3)
P 		21.4
(-1.7)
P 		23.9
(-0.4)
P 		19.7
(-2.6)
P 		12
C 27.7
(2.4)
P 		29.3
(3)
P 		25.9
(1.8)
P 		15.9
(-1.8)
P 		12.7
(-2.9)
P 		12.4
(-3)
P 		17
avr 20.3
(-0.3) 		26.8
(3) 		19.1
(-0.9) 		19.2
(-0.9) 		17.8
(-1.6) 		15
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4461
Sequence Type Exemplar sequence
Representative Public ID W08F4.11 NCBI
Target Description W08F4.11 /REP_DB=WormBase Gene ID /WP=CE14732 /TR=O02113 /GB=AAC71175.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061365 NCBI Caenorhabditis elegans W08F4.11 (W08F4.11) mRNA, complete cds. 11/11 None
W08F4.11 ENSEMBL cdna:known chromosome:CEL140:II:592573:594701:-1 gene:W08F4.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029477 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029481 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036602 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:592572-594701(-) 87.61 100.0
Public Domain and Genome References
Gene Title
Ensembl W08F4.11
Entrez Gene 189303 Entrez gene
SwissProt O02113 EMBL-EBI
WormBase CE14732 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71175 Hypothetical protein W08F4.11 [Caenorhabditis elegans] ref|NP_493766.1| W08F4.11 [Caenorhabditis elegans] 3.0E-48
Sequence
Target Sequence 
>C. ELEGANS:185732_AT
ttcaatttcaggtaattcgccggttttttcattttataaaggatcaggaaacaaagttag
aagaataacagcgttcgatgtgtcgattgcagaggcaggagacggcgatggacacggaat
cgcggccaacgaggagctgccgagattaaatagacttcaaatgcctccaaagattttcga
agataagaaagactgcttgataaaacatttattaaaaatagaaaaatcatttgaaaattt
taaaatttcagctctccacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATTTCAGGTAATTCGCCGGTT 570 583 45 Antisense
TCAGGTAATTCGCCGGTTTTTTCAT 138 603 52 Antisense
GAATAACAGCGTTCGATGTGTCGAT 22 327 107 Antisense
TCGATGTGTCGATTGCAGAGGCAGG 338 603 119 Antisense
GAGGCAGGAGACGGCGATGGACACG 223 403 136 Antisense
CGATGGACACGGAATCGCGGCCAAC 36 251 150 Antisense
GCCAACGAGGAGCTGCCGAGATTAA 522 275 169 Antisense
GAGCTGCCGAGATTAAATAGACTTC 652 387 178 Antisense
ATAGACTTCAAATGCCTCCAAAGAT 337 21 194 Antisense
GAAAGACTGCTTGATAAAACATTTA 62 361 231 Antisense
ATTTTAAAATTTCAGCTCTCCACGC 300 3 281 Antisense
Sequence Source Affymetrix Proprietary Database