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[185731_at]

Description F59E11.6 /REP_DB=WormBase Gene ID /WP=CE11506 /TR=O16760 /GB=AAG24142.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 29.8
(1.1)
A 		19.2
(-0.8)
A 		6.8
(-3)
A 		40.2
(3)
P 		33
B 43.1
(1.3)
P 		12.9
(-2.4)
A 		7.6
(-3)
A 		57
(3)
P 		49
C 3
(-3)
A 		8.3
(-2.3)
A 		13.6
(-1.5)
A 		46.3
(3)
P 		43
avr 25.3
(-0.5) 		13.5
(-2.3) 		9.3
(-3) 		47.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 27.2
(-0.1)
A 		36.7
(2.4)
A 		26.7
(-0.3)
A 		35.2
(2)
A 		38.9
(3)
A 		16.6
(-3)
A 		22
B 37.7
(-2)
A 		34.4
(-2.5)
A 		46.7
(-0.7)
A 		73.1
(3)
P 		53.1
(0.2)
P 		30.6
(-3)
A 		43
C 19.8
(-3)
A 		48.7
(0.5)
A 		68.7
(3)
A 		44.8
(0.1)
A 		52.5
(1)
A 		35.4
(-1.1)
A 		49
avr 28.2
(-2.8) 		39.9
(0.2) 		47.4
(2.1) 		51
(3) 		48.2
(2.3) 		27.5
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.9
(3)
A 		4.2
(-1.4)
A 		1.8
(-3)
A 		5.9
(-0.3)
P 		9
B 13.7
(3)
P 		3.2
(-2.3)
A 		1.8
(-3)
A 		12.2
(2.2)
P 		12
C 1
(-3)
A 		2.4
(-1.8)
A 		4.7
(0.3)
A 		7.8
(3)
P 		7
avr 8.5
(2.9) 		3.3
(-2.5) 		2.8
(-3) 		8.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5
(-2.3)
A 		13.1
(3)
A 		5.8
(-1.8)
A 		8.9
(0.2)
A 		11.7
(2.1)
A 		4
(-3)
A 		9
B 13.1
(-2)
A 		11.4
(-2.9)
A 		11.3
(-3)
A 		19.4
(1.7)
P 		21.6
(3)
P 		11.4
(-2.9)
A 		10
C 7.3
(-3)
A 		14.9
(1.5)
A 		17.5
(3)
A 		9
(-2)
A 		17
(2.7)
A 		11.8
(-0.4)
A 		10
avr 8.5
(-3) 		13.1
(0.3) 		11.5
(-0.8) 		12.4
(-0.2) 		16.8
(3) 		9.1
(-2.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185731_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11476
Sequence Type Exemplar sequence
Representative Public ID F59E11.6 NCBI
Target Description F59E11.6 /REP_DB=WormBase Gene ID /WP=CE11506 /TR=O16760 /GB=AAG24142.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072923 NCBI Caenorhabditis elegans F59E11.6 (F59E11.6) mRNA, complete cds. 11/11 None
SNAP00000037882 ENSEMBL cdna:SNAP chromosome:CEL140:V:8994464:8995675:1 10/11 None
GENEFINDER00000037890 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8994464:8995675:1 11/11 None
F59E11.6 ENSEMBL cdna:known chromosome:CEL140:V:8994464:8995675:1 gene:F59E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8994464-8995676(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59E11.6
Entrez Gene 186623 Entrez gene
SwissProt O16760 EMBL-EBI
WormBase CE11506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24142 Hypothetical protein F59E11.6 [Caenorhabditis elegans] ref|NP_505324.1| F59E11.6 [Caenorhabditis elegans] 1.0E-122
blast AAG24142 Hypothetical protein F59E11.6 [Caenorhabditis elegans] ref|NP_505324.1| F59E11.6 [Caenorhabditis elegans] 1.0E-106
blast CAE72062 Hypothetical protein CBG19148 [Caenorhabditis briggsae] 4.0E-76
blast CAE72062 Hypothetical protein CBG19148 [Caenorhabditis briggsae] 8.0E-73
blast CAE72063 Hypothetical protein CBG19149 [Caenorhabditis briggsae] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 0.012
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505324.1 1 7-29
F59E11.6 1 7-29
SNAP00000037882 1 7-29
GENEFINDER00000037890 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185731_AT
gattcatatccgctgtgtgggaagcaacaacttcaagaagtgatttttgtacgagagcac
agctatctactggtgtcgaatgcacaaaaaaaatccgaaatctcgaatcgtctttaatga
aaatcaacaaaacaacccgattcttacgaccaccgttcgaataccgagaagtcgtcaagc
attgtaaaaaagcagagaactgcttgaccaaaattacttgtgaagatggacaagactttg
tagctgatgttttagacacatatcctgcttgtcaattttttaagtttttctcagaagatt
tcgagaagtgcgcggaaaaattaatcacaacagcaaagaacagtacctgcttggacacat
tatttaatgcaaaatacttggcaaaattagacagatgccaacaatggcaggatattcagc
catgcgtctatgatgcaatatttgatgaatgtgataaagatgggaattctacatttttag
tgactcgatattctgaagttgctcctgacttctacagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCATATCCGCTGTGTGGGAAGC 527 431 83 Antisense
GAGCACAGCTATCTACTGGTGTCGA 226 391 137 Antisense
AAAATCCGAAATCTCGAATCGTCTT 706 131 172 Antisense
TCAACAAAACAACCCGATTCTTACG 512 627 206 Antisense
TTACGACCACCGTTCGAATACCGAG 378 225 226 Antisense
ACCGAGAAGTCGTCAAGCATTGTAA 437 89 245 Antisense
ACACATATCCTGCTTGTCAATTTTT 296 109 338 Antisense
GAACAGTACCTGCTTGGACACATTA 110 351 420 Antisense
GGCAGGATATTCAGCCATGCGTCTA 160 537 488 Antisense
GACTCGATATTCTGAAGTTGCTCCT 268 375 564 Antisense
AAGTTGCTCCTGACTTCTACAGAGC 699 155 578 Antisense
Sequence Source Affymetrix Proprietary Database