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[185730_at]

Description Y32B12C.3 /REP_DB=WormBase Gene ID /WP=CE19069 /TR=Q9XX06 /GB=CAA21036.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 61      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 14.3
(-1.7)
A 		48.8
(3)
A 		45.7
(2.6)
A 		4.9
(-3)
A 		44
B 81.8
(3)
A 		6.5
(-3)
A 		32.1
(-1)
A 		12.8
(-2.5)
A 		75
C 11
(-1.3)
A 		16.3
(0.6)
A 		22.7
(3)
A 		6.4
(-3)
A 		16
avr 35.7
(3) 		23.9
(0.4) 		33.5
(2.5) 		8
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 34.7
(3)
A 		8.4
(-2.6)
A 		6.4
(-3)
A 		8.4
(-2.6)
A 		8
(-2.7)
A 		33.1
(2.7)
A 		28
B 51.1
(3)
A 		38.1
(1.4)
A 		4
(-2.8)
A 		2.7
(-3)
A 		4.7
(-2.8)
A 		5.8
(-2.6)
A 		48
C 9.4
(-2.5)
A 		42
(-0.1)
A 		84.7
(3)
A 		6.6
(-2.7)
A 		7.2
(-2.6)
A 		2
(-3)
A 		83
avr 31.7
(3) 		29.5
(2.5) 		31.7
(3) 		5.9
(-3) 		6.6
(-2.8) 		13.6
(-1.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 5.2
(-0.6)
A 		10.6
(2.3)
A 		12
(3)
A 		0.7
(-3)
A 		11
B 26.1
(3)
A 		1.6
(-3)
A 		7.4
(-1.6)
A 		2.7
(-2.7)
A 		25
C 3.6
(-0.8)
A 		4.7
(0.2)
A 		7.9
(3)
A 		1.1
(-3)
A 		7
avr 11.6
(3) 		5.6
(-0.6) 		9.1
(1.5) 		1.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.4
(1.5)
A 		3
(-1.6)
A 		1.4
(-3)
A 		2.1
(-2.4)
A 		2.4
(-2.1)
A 		8.1
(3)
A 		7
B 17.8
(3)
A 		12.7
(1.2)
A 		1
(-2.9)
A 		0.7
(-3)
A 		1.9
(-2.6)
A 		2.2
(-2.5)
A 		17
C 3.5
(-2.2)
A 		12.8
(0.5)
A 		21.5
(3)
A 		1.3
(-2.8)
A 		2.3
(-2.5)
A 		0.7
(-3)
A 		21
avr 9.2
(2.8) 		9.5
(3) 		8
(1.9) 		1.4
(-3) 		2.2
(-2.4) 		3.7
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14111
Sequence Type Exemplar sequence
Representative Public ID Y32B12C.3 NCBI
Target Description Y32B12C.3 /REP_DB=WormBase Gene ID /WP=CE19069 /TR=Q9XX06 /GB=CAA21036.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074802 NCBI Caenorhabditis elegans Y32B12C.3 (Y32B12C.3) mRNA, complete cds. 11/11 None
SNAP00000038332 ENSEMBL cdna:SNAP chromosome:CEL140:V:16615374:16617115:-1 9/11 None
GENEFINDER00000038334 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16612166:16617719:-1 9/11 None
Y32B12C.3 ENSEMBL cdna:known chromosome:CEL140:V:16615374:16617349:-1 gene:Y32B12C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16615373-16617349(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32B12C.3
Entrez Gene 189574 Entrez gene
SwissProt Q9XX06 EMBL-EBI
WormBase CE19069 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 0.0
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 1.0E-160
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 1.0E-152
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 1.0E-127
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 2.0E-78
blast AAC68967 Hypothetical protein F58E2.4 [Caenorhabditis elegans] ref|NP_500352.1| F58E2.4 [Caenorhabditis elegans] 3.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.1E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-34
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-34
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-4
Sequence
Target Sequence 
>C. ELEGANS:185730_AT
atctttggatcgtttgcttccggtgaagaagctcaatatggaggccgataatgaagaaga
tgttctgagaattctgaagaatcttgatccaactgcattgagtgccatggaaattcgaaa
accagatacttctctcacatttccgggcttagacatcaatgaactttcaacgctggatca
atggaaacacgcgcaagaactattgtgtgggccgctgattgctgtgtatcaagttgagtc
tttatcacatttttccgtgatcgatgttcacctaccaacaatttcattgcaagacgtagt
atacttaaaaagtaaattccaaagctcccatactttcaccaagtgcagaattgtttttga
cgttagtgatataaatgaagacatttttgagggagaaggcttgggatttccgcacgtacg
ctcatctgcaactggtcaaccgaatatatggttctttcagtttccggaccctggtcatgt
tctccatgtattatataatgtaaatcaaaaatttgttttttctcgagttcctagatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTGGATCGTTTGCTTCCGGTG 586 29 1113 Antisense
GATCCAACTGCATTGAGTGCCATGG 597 415 1198 Antisense
AAACCAGATACTTCTCTCACATTTC 591 125 1231 Antisense
CTCACATTTCCGGGCTTAGACATCA 528 227 1246 Antisense
ACTATTGTGTGGGCCGCTGATTGCT 218 103 1311 Antisense
AAATTCCAAAGCTCCCATACTTTCA 34 115 1426 Antisense
GGGAGAAGGCTTGGGATTTCCGCAC 187 495 1503 Antisense
CTCATCTGCAACTGGTCAACCGAAT 138 229 1533 Antisense
TATATGGTTCTTTCAGTTTCCGGAC 598 643 1557 Antisense
ACCCTGGTCATGTTCTCCATGTATT 49 91 1580 Antisense
GTTTTTTCTCGAGTTCCTAGATCTA 483 449 1627 Antisense
Sequence Source Affymetrix Proprietary Database