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[185729_at]

Description T03G11.6 /REP_DB=WormBase Gene ID /WP=CE04874 /TR=Q22123 /GB=AAA82449.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 19      4grp_high_8_8 > 47      6grp_highest_nonorm > 72      6grp_total > 83      4grp_total > 40      6grp_highest_sub > 04      6grp_high1_sub > 04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 316.6
(-2.9)
P 		376.5
(-1.9)
P 		673.4
(3)
P 		310.5
(-3)
P 		363
B 254.4
(-3)
P 		386.3
(-0.6)
P 		583.4
(3)
P 		403
(-0.3)
P 		329
C 251.6
(-3)
P 		445.6
(1.5)
P 		513
(3)
P 		397.3
(0.3)
P 		261
avr 274.2
(-3) 		402.8
(-0.6) 		589.9
(3) 		370.3
(-1.2) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 340.3
(-3)
P 		413.1
(0.6)
P 		364.5
(-1.8)
P 		426.3
(1.3)
P 		460.4
(3)
P 		390.1
(-0.5)
P 		120
B 306.8
(-3)
P 		450.9
(1.9)
P 		350
(-1.5)
P 		415
(0.7)
P 		484.5
(3)
P 		384.7
(-0.4)
P 		178
C 409.9
(0.3)
P 		292.3
(-3)
P 		507.1
(3)
P 		426.8
(0.8)
P 		374
(-0.7)
P 		438.8
(1.1)
P 		215
avr 352.3
(-3) 		385.4
(-0.7) 		407.2
(0.8) 		422.7
(1.8) 		439.6
(3) 		404.5
(0.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 115.3
(0.2)
P 		81.7
(-1.3)
P 		176
(3)
P 		45.5
(-3)
P 		131
B 81.1
(-3)
P 		95.4
(-1.4)
P 		135.2
(3)
P 		85.9
(-2.5)
P 		54
C 83.3
(-2.1)
P 		128.1
(0.3)
P 		178.8
(3)
P 		67
(-3)
P 		112
avr 93.2
(-1.3) 		101.7
(-0.8) 		163.3
(3) 		66.1
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 62.7
(-3)
P 		146.9
(3)
P 		79.4
(-1.8)
P 		108.1
(0.2)
P 		138.9
(2.4)
P 		95
(-0.7)
P 		84
B 106.8
(-1.8)
P 		150.1
(0.5)
P 		85
(-3)
P 		109.9
(-1.7)
P 		196.8
(3)
P 		143.4
(0.1)
P 		112
C 152
(3)
P 		89.2
(-2.7)
P 		129.1
(0.9)
P 		85.8
(-3)
P 		121
(0.2)
P 		146.9
(2.5)
P 		66
avr 107.2
(-2) 		128.7
(0.4) 		97.8
(-3) 		101.3
(-2.6) 		152.2
(3) 		128.4
(0.4) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17176
Sequence Type Exemplar sequence
Representative Public ID T03G11.6 NCBI
Target Description T03G11.6 /REP_DB=WormBase Gene ID /WP=CE04874 /TR=Q22123 /GB=AAA82449.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076479 NCBI Caenorhabditis elegans T03G11.6 (T03G11.6) mRNA, complete cds. 11/11 None
SNAP00000028927 ENSEMBL cdna:SNAP chromosome:CEL140:X:5177666:5179080:-1 11/11 None
GENEFINDER00000028937 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5177666:5179080:-1 11/11 None
T03G11.6 ENSEMBL cdna:known chromosome:CEL140:X:5177666:5179145:-1 gene:T03G11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5177666-5179081(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03G11.6
Entrez Gene 188034 Entrez gene
SwissProt Q22123 EMBL-EBI
WormBase CE04874 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604878_S_AT similar to T03G11.6 cfa
CANINE_2:CFA.1644.1.A1_AT similar to T03G11.6 cfa
CANINE_2:CFAAFFX.27110.1.S1_S_AT similar to T03G11.6 cfa
DROSOPHILA_2:1628299_AT dm
DROSGENOME1:152689_AT dm
CHICKEN:GGA.7118.2.S1_S_AT similar to DREV protein gga
CHICKEN:GGA.7118.3.S1_AT similar to DREV protein gga
CHICKEN:GGAAFFX.11511.1.S1_S_AT similar to DREV protein gga
HG-U133B:222447_AT DORA reverse strand protein 1 hs
HG-U133_PLUS_2:222447_AT DORA reverse strand protein 1 hs
HU35KSUBA:AA094120_AT DORA reverse strand protein 1 hs
HU35KSUBB:RC_Z39930_F_AT DORA reverse strand protein 1 hs
HU35KSUBD:RC_D50975_F_AT DORA reverse strand protein 1 hs
HG-U133A:217868_S_AT DORA reverse strand protein 1 hs
HG-U133_PLUS_2:217868_S_AT DORA reverse strand protein 1 hs
HG-U133A_2:217868_S_AT DORA reverse strand protein 1 hs
U133_X3P:G7705788_3P_A_AT DORA reverse strand protein 1 hs
U133_X3P:G12652878_3P_AT DORA reverse strand protein 1 hs
HG-U95C:49640_S_AT DORA reverse strand protein 1 hs
HG-U95C:63813_AT DORA reverse strand protein 1 hs
HG-U95D:73519_AT DORA reverse strand protein 1 hs
U133_X3P:HS.14411.0.A1_3P_AT DORA reverse strand protein 1 hs
HG-U133_PLUS_2:230395_AT DORA reverse strand protein 1 hs
HG-U133B:230395_AT DORA reverse strand protein 1 hs
HG-U95E:90471_AT DORA reverse strand protein 1 hs
HG-U133_PLUS_2:226220_AT DORA reverse strand protein 1 hs
HG-U133B:226220_AT DORA reverse strand protein 1 hs
HG-U133_PLUS_2:241068_AT DORA reverse strand protein 1 hs
HG-U133B:241068_AT DORA reverse strand protein 1 hs
HG-U95C:49638_S_AT DORA reverse strand protein 1 hs
HU35KSUBA:W19984_AT DORA reverse strand protein 1 hs
U133_X3P:HS.279583.1.A1_3P_AT DORA reverse strand protein 1 hs
U133_X3P:HS.297445.0.A1_3P_AT DORA reverse strand protein 1 hs
MG-U74AV2:95045_AT RIKEN cDNA 0610012D09 gene mm
MG-U74CV2:169613_AT RIKEN cDNA 0610012D09 gene mm
MOE430A:1438171_X_AT RIKEN cDNA 0610012D09 gene mm
MOUSE430A_2:1438171_X_AT RIKEN cDNA 0610012D09 gene mm
MOUSE430_2:1438171_X_AT RIKEN cDNA 0610012D09 gene mm
MOE430A:1417710_AT RIKEN cDNA 0610012D09 gene mm
MOUSE430A_2:1417710_AT RIKEN cDNA 0610012D09 gene mm
MOUSE430_2:1417710_AT RIKEN cDNA 0610012D09 gene mm
MG-U74CV2:130332_AT RIKEN cDNA 0610012D09 gene, mRNA (cDNA clone IMAGE:4946909) mm
MOE430B:1445302_AT RIKEN cDNA 0610012D09 gene, mRNA (cDNA clone IMAGE:4946909) mm
MOUSE430_2:1445302_AT RIKEN cDNA 0610012D09 gene, mRNA (cDNA clone IMAGE:4946909) mm
Protein Similarities
Method ID Description E-Value
blast NP_508880 T03G11.6 [Caenorhabditis elegans] gb|AAA82449.1| Hypothetical protein T03G11.6 [Caenorhabditis elegans] 1.0E-163
blast NP_508880 T03G11.6 [Caenorhabditis elegans] gb|AAA82449.1| Hypothetical protein T03G11.6 [Caenorhabditis elegans] 1.0E-160
blast CAE68706 Hypothetical protein CBG14628 [Caenorhabditis briggsae] 1.0E-137
blast CAE68706 Hypothetical protein CBG14628 [Caenorhabditis briggsae] 1.0E-126
blast CAG31067 hypothetical protein [Gallus gallus] ref|NP_001006172.1| hypothetical protein LOC416623 [Gallus gallus] 4.0E-47
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 0.479999989271164
Pfam IPR007884 EMBL-EBI DREV methyltransferase 1.0E-126
Pfam IPR007884 EMBL-EBI DREV methyltransferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185729_AT
atcagttcgccaagtttctcgcaatcgagaaagaatcttggaattctaccgacaaaaagg
tgctcgatcttggagctggcaacggagacattacagagcacatgcgcccattctttgagc
atgtttatgctacagagttgtcatcgaagatgagaaaccggctcagctggaagggataca
atgttctcagtgcactcgagtgggctgaaactgatgttaaatttgatttggtcaccgctt
tcaacctcctcgatcgccattactcgccaggaaagctgttgaacgacttgtggaacgtcg
ctcgccgctcaaactgtaatgtcatcgtgtcgcttgtgcttccagtcagccattacgtgg
aattcaatccaaatggacgaagcacccgacctgacaactacctgaacgttgctggtcgta
cctacgccgaccatgtgctcagatggacaagattgccgtatctttgcgaaggagatatga
acaattctgcttactaccttcctgacgcgatctttcttctgaaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGTTCGCCAAGTTTCTCGCAAT 655 27 284 Antisense
TGCGCCCATTCTTTGAGCATGTTTA 27 585 386 Antisense
GATACAATGTTCTCAGTGCACTCGA 532 423 458 Antisense
TTTGATTTGGTCACCGCTTTCAACC 352 665 505 Antisense
ATCGCCATTACTCGCCAGGAAAGCT 396 37 536 Antisense
CTCGCCGCTCAAACTGTAATGTCAT 455 233 584 Antisense
TAATGTCATCGTGTCGCTTGTGCTT 61 637 600 Antisense
CTACCTGAACGTTGCTGGTCGTACC 18 223 681 Antisense
TACGCCGACCATGTGCTCAGATGGA 461 649 706 Antisense
TGAACAATTCTGCTTACTACCTTCC 646 571 761 Antisense
TGACGCGATCTTTCTTCTGAAACCC 491 569 786 Antisense
Sequence Source Affymetrix Proprietary Database