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[185728_s_at]

Description F45D11.6 /REP_DB=WormBase Gene ID /WP=CE23739 /TR=Q9N5T5 /GB=AAF39819.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 3.8
(-2.9)
A 		3.5
(-3)
A 		21
(1.6)
A 		26.1
(3)
A 		23
B 2.8
(-3)
A 		5.7
(3)
A 		3.3
(-2)
A 		4.2
(-0.1)
A 		3
C 5.3
(-2.7)
A 		8.4
(-2.4)
A 		2.3
(-3)
A 		59.6
(3)
A 		57
avr 4
(-3) 		5.9
(-2.6) 		8.9
(-1.9) 		30
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.3
(-2.7)
A 		2
(-3)
A 		26
(3)
A 		2.4
(-2.9)
A 		5.5
(-2.1)
A 		8
(-1.5)
A 		24
B 1.9
(-3)
A 		4.7
(1.7)
A 		5.5
(3)
A 		4
(0.5)
A 		3.9
(0.3)
A 		3
(-1.2)
A 		4
C 2.2
(-2.7)
A 		12.9
(3)
A 		8
(0.4)
A 		5.2
(-1.1)
A 		3
(-2.3)
A 		1.7
(-3)
A 		11
avr 2.5
(-3) 		6.5
(-0.8) 		13.2
(3) 		3.9
(-2.2) 		4.1
(-2.1) 		4.2
(-2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-2.2)
A 		0.8
(-3)
A 		5.5
(3)
A 		3.8
(0.8)
A 		5
B 0.9
(-2)
A 		1.4
(3)
A 		0.8
(-3)
A 		0.9
(-2)
A 		1
C 1.8
(-2.4)
A 		2.4
(-2)
A 		0.8
(-3)
A 		10.1
(3)
A 		9
avr 1.4
(-3) 		1.5
(-2.8) 		2.4
(-1.3) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.7
(-2.9)
A 		5.7
(3)
A 		0.6
(-3)
A 		1.7
(-1.7)
A 		2
(-1.4)
A 		5
B 0.7
(-3)
A 		1.6
(3)
A 		1.3
(1)
A 		1.1
(-0.3)
A 		1.6
(3)
A 		1.1
(-0.3)
A 		1
C 0.8
(-2.6)
A 		3.9
(3)
A 		2
(-0.5)
A 		1
(-2.3)
A 		1
(-2.3)
A 		0.6
(-3)
A 		3
avr 0.7
(-3) 		2.1
(0.7) 		3
(3) 		0.9
(-2.5) 		1.4
(-1.2) 		1.2
(-1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185728_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4611
Sequence Type Exemplar sequence
Representative Public ID F45D11.6 NCBI
Target Description F45D11.6 /REP_DB=WormBase Gene ID /WP=CE23739 /TR=Q9N5T5 /GB=AAF39819.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075444(11), NM_061478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075444 NCBI Caenorhabditis elegans Y116F11B.7 (Y116F11B.7) mRNA, complete cds. 11/11 A 
NM_061478 NCBI Caenorhabditis elegans F45D11.6 (F45D11.6) mRNA, complete cds. 11/11 None
SNAP00000019552 ENSEMBL cdna:SNAP chromosome:CEL140:II:997098:998671:1 11/11 None
GENEFINDER00000019569 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:997098:1002125:1 11/11 None
SNAP00000031763 ENSEMBL cdna:SNAP chromosome:CEL140:V:19846580:19850980:1 11/11 None
GENEFINDER00000031781 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19846580:19850980:1 11/11 None
SNAP00000032810 ENSEMBL cdna:SNAP chromosome:CEL140:V:19964678:19966251:-1 10/11 None
SNAP00000032811 ENSEMBL cdna:SNAP chromosome:CEL140:V:19968254:19969827:1 10/11 None
F45D11.6 ENSEMBL cdna:known chromosome:CEL140:II:997098:998671:1 gene:F45D11.6 11/11 A 
Y116F11B.7 ENSEMBL cdna:known chromosome:CEL140:V:19846580:19850980:1 gene:Y116F11B.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031760 5/11 Cross Hyb Matching Probes None
GENEFINDER00000032820 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032835 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl F45D11.6
Y116F11B.7
Entrez Gene 185783 Entrez gene
191019 Entrez gene
SwissProt Q9N5T5 EMBL-EBI
Q9NEK2 EMBL-EBI
WormBase CE35935 Wormbase
CE25723 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23927.1.S1_AT similar to pogo transposable element with KRAB domain cfa
HG-U133_PLUS_2:218229_S_AT pogo transposable element with KRAB domain hs
HG-U133A:218229_S_AT pogo transposable element with KRAB domain hs
HG-U133A_2:218229_S_AT pogo transposable element with KRAB domain hs
HU35KSUBA:H91564_AT pogo transposable element with KRAB domain hs
U133_X3P:G8923835_3P_A_AT pogo transposable element with KRAB domain hs
U133_X3P:HS.284227.0.S2_3P_X_AT pogo transposable element with KRAB domain hs
U133_X3P:HS.284227.0.S2_3P_AT pogo transposable element with KRAB domain hs
HG-U133_PLUS_2:222564_AT pogo transposable element with KRAB domain hs
HG-U133B:222564_AT pogo transposable element with KRAB domain hs
HG-U95B:53823_AT pogo transposable element with KRAB domain hs
HG-U133_PLUS_2:239392_S_AT Pogo transposable element with KRAB domain hs
HG-U133B:239392_S_AT Pogo transposable element with KRAB domain hs
HG-U95B:47189_AT Pogo transposable element with KRAB domain hs
HG-U95C:57391_AT Pogo transposable element with KRAB domain hs
HG-U95E:85748_AT Pogo transposable element with KRAB domain hs
HU35KSUBD:RC_AA398074_AT Pogo transposable element with KRAB domain hs
U133_X3P:HS.191187.0.A1_3P_A_AT Pogo transposable element with KRAB domain hs
MG-U74BV2:105051_AT pogo transposable element with KRAB domain mm
MG-U74CV2:168532_F_AT pogo transposable element with KRAB domain mm
MOE430B:1447864_S_AT pogo transposable element with KRAB domain mm
MOUSE430_2:1447864_S_AT pogo transposable element with KRAB domain mm
MOE430B:1459896_AT pogo transposable element with KRAB domain mm
MOUSE430_2:1459896_AT pogo transposable element with KRAB domain mm
RAE230B:1397434_AT Pogo transposable element with KRAB domain (predicted) rn
RAT230_2:1397434_AT Pogo transposable element with KRAB domain (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB81975 Hypothetical protein Y116F11B.7 [Caenorhabditis elegans] ref|NP_507845.1| Y116F11B.7 [Caenorhabditis elegans] 0.0
blast AAF39819 Hypothetical protein F45D11.6 [Caenorhabditis elegans] ref|NP_493879.2| F45D11.6 [Caenorhabditis elegans] 0.0
blast NP_503720 W02H5.4 [Caenorhabditis elegans] ref|NP_503721.1| W02H5.3 [Caenorhabditis elegans] gb|AAF60381.2| Hypothetical protein W02H5.4 [Caenorhabditis elegans] gb|AAF60383.2| Hypothetical protein W02H5.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 6.99999975040555E-4
Pfam IPR004875 EMBL-EBI CENP-B protein 5.5E-58
Pfam IPR004875 EMBL-EBI CENP-B protein 2.6E-5
Pfam IPR004875 EMBL-EBI CENP-B protein 2.1E-50
Pfam IPR004875 EMBL-EBI CENP-B protein 1.9E-63
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.3E-10
Pfam IPR004875 EMBL-EBI CENP-B protein 1.9E-63
Pfam IPR004875 EMBL-EBI CENP-B protein 1.6E-41
Pfam IPR004875 EMBL-EBI CENP-B protein 3.4E-54
Sequence
Target Sequence 
>C. ELEGANS:185728_S_AT
tacagtgcttctaactgctcgagccgatggatataagtgccgtccatatgtgctccttcc
tcgtaccagacctgacaaagaaattgccgcaagattcaagaacagtctgcaactgagctg
gtgtaatcgaacgtttttcaacgatgaagtgacagaagattacttgaacactatcatcgg
gcctcctttttttggaaaaagacttttggcttgggacgcattcagatgccatatcagtga
tgcaacaaaacgagtgctcaaaaatttgaaagtggatacagcagttgttcccggatgcgc
cttgacaatcgctacagatggaagtgaagataatcaggttcactgttttgcaccaaacgg
atcgattccgtcgggtctggatcttctcaacagcacgcgtatagaaaattctctcgtcga
cctcgtgcaggatattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTGCTTCTAACTGCTCGAGCC 466 643 732 Antisense
ATATAAGTGCCGTCCATATGTGCTC 436 19 762 Antisense
CTTCCTCGTACCAGACCTGACAAAG 64 3 787 Antisense
AGTCTGCAACTGAGCTGGTGTAATC 178 61 835 Antisense
TACTTGAACACTATCATCGGGCCTC 427 645 892 Antisense
GACTTTTGGCTTGGGACGCATTCAG 608 371 932 Antisense
GGATGCGCCTTGACAATCGCTACAG 258 513 1024 Antisense
ATCGATTCCGTCGGGTCTGGATCTT 136 35 1092 Antisense
GATCTTCTCAACAGCACGCGTATAG 280 419 1111 Antisense
TATAGAAAATTCTCTCGTCGACCTC 398 655 1131 Antisense
TCGTCGACCTCGTGCAGGATATTGG 409 605 1145 Antisense
Sequence Source Affymetrix Proprietary Database