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[185727_at]

Description B0336.12 /REP_DB=WormBase Gene ID /WP=CE00780 /TR=Q10957 /GB=AAK18859.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 21.2
(-3)
A 		65.7
(2.8)
A 		52
(1)
A 		67.6
(3)
A 		46
B 14.1
(-0)
A 		19.2
(3)
A 		18.5
(2.6)
A 		9.1
(-3)
A 		10
C 36.5
(-0.2)
A 		9.2
(-2.7)
A 		5.3
(-3)
A 		73.2
(3)
A 		68
avr 23.9
(-3) 		31.4
(-1.3) 		25.3
(-2.7) 		50
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 28.8
(-0)
A 		19.6
(-1.2)
A 		14.9
(-1.8)
A 		52.2
(3)
A 		42.2
(1.7)
A 		6
(-3)
A 		46
B 49.8
(3)
A 		26.8
(-0.2)
A 		36.2
(1.1)
A 		6.5
(-3)
A 		6.8
(-3)
A 		10.7
(-2.4)
A 		43
C 6.8
(-2.9)
A 		14.3
(-2.1)
A 		5.3
(-3)
A 		65.6
(3)
A 		43.3
(0.8)
A 		36.4
(0.1)
A 		60
avr 28.5
(-0.3) 		20.2
(-2.4) 		18.8
(-2.7) 		41.4
(3) 		30.8
(0.3) 		17.7
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.7
(-3)
A 		14.3
(3)
A 		13.6
(2.4)
A 		9.9
(-1)
A 		7
B 4.5
(2.6)
A 		4.7
(3)
A 		4.3
(2.1)
A 		1.9
(-3)
A 		3
C 12.1
(2.9)
A 		2.6
(-2.6)
A 		1.9
(-3)
A 		12.3
(3)
A 		10
avr 8.1
(3) 		7.2
(-0.6) 		6.6
(-3) 		8
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.3
(-1.1)
A 		7
(-0.2)
A 		3.2
(-2.1)
A 		13.2
(3)
A 		12.7
(2.7)
A 		1.5
(-3)
A 		12
B 17.3
(3)
A 		8.9
(-0.2)
A 		8.8
(-0.3)
A 		1.7
(-3)
A 		2.8
(-2.6)
A 		4
(-2.1)
A 		16
C 2.5
(-2.4)
A 		4.4
(-1.5)
A 		1.3
(-3)
A 		13.2
(2.6)
A 		14
(3)
A 		12.2
(2.1)
A 		13
avr 8.4
(1.4) 		6.8
(-0.3) 		4.4
(-3) 		9.4
(2.6) 		9.8
(3) 		5.9
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185727_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6856
Sequence Type Exemplar sequence
Representative Public ID B0336.12 NCBI
Target Description B0336.12 /REP_DB=WormBase Gene ID /WP=CE00780 /TR=Q10957 /GB=AAK18859.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065832 NCBI Caenorhabditis elegans B0336.12 (B0336.12) mRNA, complete cds. 11/11 None
B0336.12 ENSEMBL cdna:known chromosome:CEL140:III:5710011:5710458:-1 gene:B0336.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008888 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5710009-5710457(-) 49.29 100.0
Public Domain and Genome References
Gene Title
Ensembl B0336.12
Entrez Gene 175799 Entrez gene
SwissProt Q10957 EMBL-EBI
WormBase CE00780 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18859 Hypothetical protein B0336.12 [Caenorhabditis elegans] ref|NP_498233.1| B0336.12 [Caenorhabditis elegans] 3.0E-45
Sequence
Target Sequence 
>C. ELEGANS:185727_AT
gaaaaatcgatgcaactcccgtatcaacaaaagtctagaggtacagtactctttaaaggc
ggacgtatttttgtattttataaaaagacgtgtcgagaccaggcaccttatttttgaagc
aaaaatcgaaaaatctgggtattatcaaaaaagatcacaaaacggcgcaaatagaaattc
gaaaaaaaatgtcaaaatgttgcgagagaagaaggaagcatcctccgctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAATCGATGCAACTCCCGTATC 52 355 15 Antisense
TCGATGCAACTCCCGTATCAACAAA 526 603 21 Antisense
GCAACTCCCGTATCAACAAAAGTCT 459 319 26 Antisense
ACAAAAGTCTAGAGGTACAGTACTC 36 3 41 Antisense
AAAGACGTGTCGAGACCAGGCACCT 669 113 98 Antisense
TGTCGAGACCAGGCACCTTATTTTT 47 557 105 Antisense
GACCAGGCACCTTATTTTTGAAGCA 69 383 111 Antisense
AATCGAAAAATCTGGGTATTATCAA 11 141 138 Antisense
AAAAGATCACAAAACGGCGCAAATA 241 133 163 Antisense
CAAAACGGCGCAAATAGAAATTCGA 394 191 172 Antisense
GAAGAAGGAAGCATCCTCCGCTACA 117 341 222 Antisense
Sequence Source Affymetrix Proprietary Database