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[185726_at]

Description F41H10.4 /REP_DB=WormBase Gene ID /WP=CE27162 /TR=Q20298 /GB=AAK29812.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 88      6grp_total > 96      4grp_total > 62      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 557
1 2 3 4 range
A 937.8
(3)
P 		629.5
(-1.1)
P 		715.9
(0)
P 		486.6
(-3)
P 		451
B 868.5
(3)
P 		711
(0)
P 		717.5
(0.2)
P 		548.6
(-3)
P 		320
C 994.9
(3)
P 		720.4
(0)
P 		724.9
(0.1)
P 		438
(-3)
P 		557
avr 933.7
(3) 		687
(-0.3) 		719.4
(0.1) 		491.1
(-3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1454
1 2 3 4 5 6 range
A 915.7
(-2.5)
P 		835
(-3)
P 		1220.2
(-0.6)
P 		1260.6
(-0.4)
P 		1759.9
(2.7)
P 		1807.6
(3)
P 		973
B 905.5
(-3)
P 		897
(-3)
P 		1106.2
(-2)
P 		1457.2
(-0.4)
P 		1843.8
(1.4)
P 		2176.1
(3)
P 		1279
C 722
(-3)
P 		796
(-2.6)
P 		1005.4
(-1.6)
P 		1405.2
(0.4)
P 		1674.4
(1.8)
P 		1917.6
(3)
P 		1196
avr 847.7
(-3) 		842.7
(-3) 		1110.6
(-1.6) 		1374.3
(-0.2) 		1759.4
(1.9) 		1967.1
(3) 		1124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 341.5
(3)
P 		136.6
(-1.5)
P 		187.2
(-0.4)
P 		71.2
(-3)
P 		270
B 277
(3)
P 		175.6
(-0.8)
P 		166.3
(-1.1)
P 		116.9
(-3)
P 		160
C 329.3
(3)
P 		207.1
(0.1)
P 		252.7
(1.2)
P 		73.9
(-3)
P 		255
avr 315.9
(3) 		173.1
(-0.7) 		202.1
(0) 		87.3
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 168.8
(-3)
P 		297
(-0.9)
P 		265.7
(-1.4)
P 		319.7
(-0.5)
P 		531.1
(3)
P 		440.1
(1.5)
P 		362
B 315.1
(-2.5)
P 		298.6
(-2.7)
P 		268.6
(-3)
P 		386
(-1.7)
P 		749.1
(2.3)
P 		811.5
(3)
P 		543
C 267.6
(-2.6)
P 		242.9
(-3)
P 		255.9
(-2.8)
P 		282.6
(-2.4)
P 		541.8
(1.5)
P 		641.9
(3)
P 		399
avr 250.5
(-3) 		279.5
(-2.5) 		263.4
(-2.8) 		329.4
(-1.8) 		607.3
(2.6) 		631.2
(3) 		381
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10900
Sequence Type Exemplar sequence
Representative Public ID F41H10.4 NCBI
Target Description F41H10.4 /REP_DB=WormBase Gene ID /WP=CE27162 /TR=Q20298 /GB=AAK29812.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068390 NCBI Caenorhabditis elegans F41H10.11 (F41H10.11) mRNA, complete cds. 11/11 None
SNAP00000003906 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5366857:5368711:1 11/11 None
GENEFINDER00000003916 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5364549:5368711:1 11/11 None
F41H10.11 ENSEMBL cdna:known chromosome:CEL140:IV:5366856:5368845:1 gene:F41H10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5364554-5368717(+) 98.21 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sand-1
Ensembl F41H10.11
Entrez Gene 177318 Entrez gene
SwissProt Q9BI89 EMBL-EBI
WormBase CE31693 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265256_AT SAND family protein at
CANINE:1584483_AT similar to MON1 homolog A cfa
CANINE_2:CFA.11848.1.A1_S_AT similar to MON1 homolog A cfa
DROSOPHILA_2:1633448_AT dm
DROSGENOME1:145785_AT dm
CHICKEN:GGAAFFX.12915.1.S1_S_AT MON1 homolog A (yeast) gga
CHICKEN:GGAAFFX.1864.2.S1_S_AT MON1 homolog A (yeast) gga
HG-U133B:224500_S_AT MON1 homolog A (yeast) hs
HG-U133_PLUS_2:224500_S_AT MON1 homolog A (yeast) hs
HU35KSUBB:RC_N67515_AT MON1 homolog A (yeast) hs
HU35KSUBD:RC_R40481_AT MON1 homolog A (yeast) hs
U133_X3P:G13623406_3P_S_AT MON1 homolog A (yeast) hs
HG-U95C:62520_AT MON1 homolog A (yeast) hs
MG-U74BV2:116586_AT MON1 homolog A (yeast) mm
MG-U74CV2:171001_AT MON1 homolog A (yeast) mm
MOE430B:1428898_AT MON1 homolog A (yeast) mm
MOUSE430_2:1428898_AT MON1 homolog A (yeast) mm
MU19KSUBC:TC38864_AT MON1 homolog A (yeast) (Mon1a), mRNA mm
RG-U34C:RC_AI237869_AT similar to RIKEN cDNA 2810468K17 (predicted) rn
RAE230A:1373307_AT similar to RIKEN cDNA 2810468K17 (predicted) rn
RAT230_2:1373307_AT similar to RIKEN cDNA 2810468K17 (predicted) rn
YEAST_2:1773059_AT Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate Sc
Protein Similarities
Method ID Description E-Value
blast AAK29811 Hypothetical protein F41H10.11 [Caenorhabditis elegans] ref|NP_500791.2| F41H10.11 [Caenorhabditis elegans] 0.0
blast C88690 protein F41H10.4 [imported] - Caenorhabditis elegans 0.0
blast CAE72720 Hypothetical protein CBG19957 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004353 EMBL-EBI Yeast 73.5kDa hypothetical-related protein 1.0E-126
Pfam IPR004353 EMBL-EBI Yeast 73.5kDa hypothetical-related protein 1.0E-126
Pfam IPR004353 EMBL-EBI Yeast 73.5kDa hypothetical-related protein 1.0E-45
Pfam IPR004353 EMBL-EBI Yeast 73.5kDa hypothetical-related protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500791.2 1 412-434
F41H10.11 1 412-434
SNAP00000003906 1 408-430
GENEFINDER00000003916 1 1054-1076
Sequence
Target Sequence 
>C. ELEGANS:185726_AT
caatctgtctgccacggttcaatgacacaggatttttctacgcctacatatcgtatccat
ggtgcaataaagagcaagatattcctgtgtgcattgtgcttctttcggtgaaacgagatc
atttcgatgggctcaaggaagttcgacaacaaattgtgacgaagttggaaaataatcaaa
agttctttgttaactttgcacaggcgatgaagacgccgaatctttatcaaatatcacaaa
tcggatcgaattccgaatcgctttggtcgtttttgtatttaaatcattcttcaaagcaag
tctgtatgtcagcctcaaaaattcccctaataacacgtgacgaacgatggattgctcgtt
cagaaatgcgtcgatcttcatcattatcatctctccatccacatcttcgaactcttttcg
tacgtggcaccaaacattgtctttttgtttgggtcactgatctcttttcactttactgca
tattcggaccatttgtcaccgcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTGTCTGCCACGGTTCAATGA 77 183 2606 Antisense
GACACAGGATTTTTCTACGCCTACA 573 365 2629 Antisense
ACGCCTACATATCGTATCCATGGTG 547 91 2645 Antisense
GATATTCCTGTGTGCATTGTGCTTC 427 427 2683 Antisense
GAATTCCGAATCGCTTTGGTCGTTT 133 323 2853 Antisense
GTATGTCAGCCTCAAAAATTCCCCT 37 457 2909 Antisense
CGATCTTCATCATTATCATCTCTCC 275 249 2977 Antisense
CATCCACATCTTCGAACTCTTTTCG 507 211 3001 Antisense
TGTTTGGGTCACTGATCTCTTTTCA 160 561 3051 Antisense
GATCTCTTTTCACTTTACTGCATAT 486 419 3064 Antisense
ATTCGGACCATTTGTCACCGCAACA 705 7 3087 Antisense
Sequence Source Affymetrix Proprietary Database