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[185725_at]

Description F46E10.3 /REP_DB=WormBase Gene ID /WP=CE20814 /TR=Q9UAV6 /GB=AAD14714.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 21.7
(-3)
A 		59.3
(1.8)
A 		54.2
(1.1)
A 		68.8
(3)
P 		47
B 15.2
(-3)
A 		81.4
(3)
P 		33.2
(-1.4)
A 		21.5
(-2.4)
A 		66
C 27.3
(-3)
A 		54.3
(3)
A 		45.8
(1.1)
P 		49.5
(1.9)
P 		27
avr 21.4
(-3) 		65
(3) 		44.4
(0.2) 		46.6
(0.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 60.2
(2.4)
P 		39.3
(-1)
A 		37.4
(-1.3)
P 		26.8
(-3)
A 		34.9
(-1.7)
A 		64.1
(3)
A 		37
B 30.5
(-0.9)
A 		18.5
(-2.4)
A 		43.4
(0.7)
M 		62.2
(3)
P 		13.3
(-3)
A 		29.1
(-1.1)
A 		49
C 44.6
(2.9)
A 		32.2
(1)
A 		28
(0.4)
A 		6.1
(-3)
A 		45.3
(3)
M 		13.2
(-1.9)
A 		39
avr 45.1
(3) 		30
(-3) 		36.3
(-0.5) 		31.7
(-2.3) 		31.2
(-2.5) 		35.5
(-0.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.9
(-3)
A 		12.9
(1.8)
A 		14.2
(3)
A 		10.1
(-0.9)
P 		6
B 4.8
(-2.9)
A 		20.1
(3)
P 		7.7
(-1.8)
A 		4.6
(-3)
A 		16
C 9.1
(-2.4)
A 		15.6
(2.7)
A 		16
(3)
P 		8.3
(-3)
P 		8
avr 7.3
(-3) 		16.2
(3) 		12.6
(0.6) 		7.7
(-2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.1
(-0.1)
P 		14
(1.9)
A 		8.1
(-2.1)
P 		6.8
(-3)
A 		10.5
(-0.5)
A 		15.6
(3)
A 		9
B 10.6
(-0.2)
A 		6.2
(-2.6)
A 		10.5
(-0.2)
M 		16.5
(3)
P 		5.4
(-3)
A 		10.8
(-0.1)
A 		11
C 16.5
(3)
A 		9.8
(0.4)
A 		7.1
(-0.7)
A 		1.2
(-3)
A 		14.7
(2.3)
M 		4.4
(-1.7)
A 		15
avr 12.7
(3) 		10
(-0.6) 		8.6
(-2.5) 		8.2
(-3) 		10.2
(-0.3) 		10.3
(-0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11467
Sequence Type Exemplar sequence
Representative Public ID F46E10.3 NCBI
Target Description F46E10.3 /REP_DB=WormBase Gene ID /WP=CE20814 /TR=Q9UAV6 /GB=AAD14714.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072256 NCBI Caenorhabditis elegans F46E10.3 (F46E10.3) mRNA, complete cds. 11/11 None
F46E10.3 ENSEMBL cdna:known chromosome:CEL140:V:6521210:6522016:1 gene:F46E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6521209-6522016(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46E10.3
Entrez Gene 185849 Entrez gene
SwissProt Q9UAV6 EMBL-EBI
WormBase CE20814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14714 Hypothetical protein F46E10.3 [Caenorhabditis elegans] ref|NP_504657.1| F46E10.3 [Caenorhabditis elegans] 2.0E-94
blast CAB63339 Hypothetical protein Y106G6H.9 [Caenorhabditis elegans] ref|NP_492734.1| Y106G6H.9 [Caenorhabditis elegans] 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185725_AT
gagaggatctgccttacatcgaaaaatgagttaatggaagtgtgcatcagtggaacagtt
atttcgaatgagcaatatgagaggaatttatttattaaatccgaagtgattatttttcgt
ttccctcaatggacgactttgaaccagcttttaaaattcaatttcaccacaatagtatta
aatcactcatcgaatctgacagcaaaagagtggaatatgttcctccgtcactggatttct
tccctttccaatcaaaaccttcaacgtcttgtgttttcgttaagcgacaggggtgacgtg
ccaactattatgaatctacctcaccgtaaaattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGGATCTGCCTTACATCGAAAA 405 395 85 Antisense
GGAAGTGTGCATCAGTGGAACAGTT 693 531 120 Antisense
TATTTTTCGTTTCCCTCAATGGACG 19 619 195 Antisense
AATGGACGACTTTGAACCAGCTTTT 259 163 212 Antisense
AAATCACTCATCGAATCTGACAGCA 228 117 264 Antisense
GAGTGGAATATGTTCCTCCGTCACT 403 401 292 Antisense
ATCAAAACCTTCAACGTCTTGTGTT 324 25 335 Antisense
GTCTTGTGTTTTCGTTAAGCGACAG 628 467 350 Antisense
TAAGCGACAGGGGTGACGTGCCAAC 440 635 365 Antisense
GTGCCAACTATTATGAATCTACCTC 15 479 382 Antisense
GAATCTACCTCACCGTAAAATTGGA 92 327 396 Antisense
Sequence Source Affymetrix Proprietary Database