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[185724_s_at]

Description Y73F8A.25 /REP_DB=WormBase Gene ID /WP=CE25593 /TR=Q9NA34 /GB=CAB70231.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 48      4grp_high_8_8 > 43      6grp_highest_nonorm > 50      6grp_total > 29      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 726.3
(3)
P 		668.2
(2.1)
P 		581.3
(0.7)
P 		352.6
(-3)
P 		374
B 641.1
(3)
P 		571.1
(1.6)
P 		349.2
(-2.8)
P 		341.2
(-3)
P 		300
C 611.2
(2.8)
P 		620.3
(3)
P 		471.6
(-0.8)
P 		383.2
(-3)
P 		237
avr 659.5
(3) 		619.9
(2.2) 		467.4
(-0.8) 		359
(-3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 639.2
(3)
P 		537.1
(0.5)
P 		394.2
(-3)
P 		448.5
(-1.7)
P 		560.4
(1.1)
P 		468.5
(-1.2)
P 		245
B 709.2
(3)
P 		565
(-0.2)
P 		447.1
(-2.9)
P 		442
(-3)
P 		457.7
(-2.6)
P 		450.3
(-2.8)
P 		267
C 606.2
(3)
P 		488.6
(0.3)
P 		494.8
(0.5)
P 		341.4
(-3)
P 		567.4
(2.1)
P 		408.5
(-1.5)
P 		265
avr 651.5
(3) 		530.2
(-0) 		445.4
(-2.1) 		410.6
(-3) 		528.5
(-0.1) 		442.4
(-2.2) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 264.4
(3)
P 		145
(-0.4)
P 		152
(-0.2)
P 		51.6
(-3)
P 		213
B 204.4
(3)
P 		141.1
(0.1)
P 		80.9
(-2.6)
P 		72.7
(-3)
P 		132
C 202.3
(3)
P 		178.3
(2)
P 		164.4
(1.3)
P 		64.6
(-3)
P 		138
avr 223.7
(3) 		154.8
(0.4) 		132.4
(-0.4) 		63
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 117.8
(-1.2)
P 		191
(3)
P 		85.9
(-3)
P 		113.8
(-1.4)
P 		169.1
(1.7)
P 		114.1
(-1.4)
P 		105
B 246.8
(3)
P 		188
(0.4)
P 		108.6
(-3)
P 		117.1
(-2.6)
P 		186
(0.4)
P 		167.9
(-0.4)
P 		138
C 224.7
(3)
P 		149.1
(0.1)
P 		125.9
(-0.8)
P 		68.7
(-3)
P 		183.6
(1.4)
P 		136.8
(-0.4)
P 		156
avr 196.4
(3) 		176
(1.7) 		106.8
(-2.6) 		99.9
(-3) 		179.6
(2) 		139.6
(-0.5) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185724_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8828
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.25 NCBI
Target Description Y73F8A.25 /REP_DB=WormBase Gene ID /WP=CE25593 /TR=Q9NA34 /GB=CAB70231.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182296(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182296 NCBI Caenorhabditis elegans Y73F8A.25b (Y73F8A.25) mRNA, complete cds. 9/11 None
Y73F8A.25b ENSEMBL cdna:known chromosome:CEL140:IV:15455116:15468007:-1 gene:Y73F8A.25 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070459 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030896 7/11 Cross Hyb Matching Probes None
Y73F8A.25a 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178432 2 1 NM_182296 185724_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15455265-15471450(-) 99.11 100.0
Public Domain and Genome References
Ensembl Y73F8A.25
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD59165 Hypothetical protein Y73F8A.25b [Caenorhabditis elegans] ref|NP_872096.1| Y73F8A.25b [Caenorhabditis elegans] 1.0E-140
blast CAB70231 Hypothetical protein Y73F8A.25a [Caenorhabditis elegans] ref|NP_502860.2| Y73F8A.25a [Caenorhabditis elegans] 1.0E-137
blast CAE68085 Hypothetical protein CBG13718 [Caenorhabditis briggsae] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:185724_S_AT
aaaaatccgtctcaaaatgcacatttttgagtgttttgcctgcagaatcatcgtctcttc
ctcttccctcttttcaaatttattaagaaaatcaatcgctataattcagaaattagtgct
ctttaaaaatggaaaatggttttcgtcgacttctaacaaattttttaacgaaaaatcaga
aaaaaacccatttttcggaaaaaaatggaaaaaagttgttttccaaaaatttcatttcga
aaaatcgaatttttttattaaaaaaaaaatcttccactttcggcaagctttttttcaaaa
aaacaattcgaaaaatatcctttttttttcaagaaaaaaatggaaaaaagttattttcca
aaaatgtctcatttgctcttttgtaaactctgccgccgccccaattatcgcgtcgggacc
atcatcaaatttctcgataatttcatcaaaaagtgacactcacacagttgtacaggcttt
tgaatcgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAATCCGTCTCAAAATGCACATT 428 129 1995 Antisense
ATTTTTGAGTGTTTTGCCTGCAGAA 540 15 2017 Antisense
TTTTGCCTGCAGAATCATCGTCTCT 554 677 2028 Antisense
TGGAAAATGGTTTTCGTCGACTTCT 601 545 2124 Antisense
AAATCTTCCACTTTCGGCAAGCTTT 211 117 2261 Antisense
GTCTCATTTGCTCTTTTGTAAACTC 601 469 2360 Antisense
ATTTGCTCTTTTGTAAACTCTGCCG 363 17 2365 Antisense
CCAATTATCGCGTCGGGACCATCAT 597 277 2395 Antisense
GTCGGGACCATCATCAAATTTCTCG 94 473 2406 Antisense
GTGACACTCACACAGTTGTACAGGC 169 483 2447 Antisense
GTTGTACAGGCTTTTGAATCGTCGA 466 437 2461 Antisense
Sequence Source Affymetrix Proprietary Database