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[185723_at]

Description H14N18.3 /REP_DB=WormBase Gene ID /WP=CE17975 /TR=O61977 /GB=AAC17782.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 36      6grp_total > 73      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1017
1 2 3 4 range
A 2466.3
(3)
P 		2032.3
(0.3)
P 		2352.1
(2.3)
P 		1497.8
(-3)
P 		969
B 2513.9
(3)
P 		2267.3
(1.1)
P 		2250.8
(1)
P 		1715.2
(-3)
P 		799
C 2288.8
(0.7)
P 		2514.5
(3)
P 		2390.8
(1.7)
P 		1933.9
(-3)
P 		581
avr 2423
(3) 		2271.4
(1.7) 		2331.2
(2.2) 		1715.6
(-3) 		707

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4280
1 2 3 4 5 6 range
A 2493.7
(-3)
P 		3168.7
(-2.1)
P 		5666.5
(1.4)
P 		6773.6
(3)
P 		5485.5
(1.2)
P 		3799.2
(-1.2)
P 		4280
B 2873.5
(-3)
P 		3669.3
(-1.4)
P 		5204.1
(1.8)
P 		5809.8
(3)
P 		5666.3
(2.7)
P 		4725.9
(0.8)
P 		2936
C 2592
(-3)
P 		3956
(0.1)
P 		4909.5
(2.3)
P 		5231.2
(3)
P 		4946.7
(2.4)
P 		3278.2
(-1.4)
P 		2639
avr 2653.1
(-3) 		3598
(-1.3) 		5260
(1.8) 		5938.2
(3) 		5366.2
(2) 		3934.4
(-0.7) 		3285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 679
1 2 3 4 range
A 898
(3)
P 		441.2
(-1)
P 		614.9
(0.5)
P 		219.3
(-3)
P 		679
B 801.7
(3)
P 		560
(-0.3)
P 		521.6
(-0.9)
P 		365.5
(-3)
P 		436
C 757.6
(2.1)
P 		722.9
(1.7)
P 		833.3
(3)
P 		326.1
(-3)
P 		507
avr 819.1
(3) 		574.7
(0.2) 		656.6
(1.1) 		303.6
(-3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1842
1 2 3 4 5 6 range
A 459.7
(-3)
P 		1126.9
(0.2)
P 		1234
(0.7)
P 		1717.9
(3)
P 		1655.3
(2.7)
P 		925
(-0.8)
P 		1258
B 999.8
(-3)
P 		1221.4
(-2)
P 		1263.7
(-1.8)
P 		1538.8
(-0.5)
P 		2302.1
(3)
P 		1762.3
(0.5)
P 		1302
C 960.7
(-3)
P 		1207.1
(-0.7)
P 		1249.6
(-0.3)
P 		1052
(-2.1)
P 		1600.7
(3)
P 		1097.4
(-1.7)
P 		640
avr 806.7
(-3) 		1185.1
(-0.8) 		1249.1
(-0.5) 		1436.2
(0.6) 		1852.7
(3) 		1261.6
(-0.4) 		1046
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11314
Sequence Type Exemplar sequence
Representative Public ID H14N18.3 NCBI
Target Description H14N18.3 /REP_DB=WormBase Gene ID /WP=CE17975 /TR=O61977 /GB=AAC17782.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072903 NCBI Caenorhabditis elegans H14N18.3 (H14N18.3) mRNA, complete cds. 11/11 None
SNAP00000023335 ENSEMBL cdna:SNAP chromosome:CEL140:V:8925676:8926444:1 11/11 None
GENEFINDER00000023341 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8925676:8926444:1 11/11 None
H14N18.3 ENSEMBL cdna:known chromosome:CEL140:V:8925675:8926490:1 gene:H14N18.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8925676-8926445(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H14N18.3
Entrez Gene 179270 Entrez gene
SwissProt O61977 EMBL-EBI
WormBase CE17975 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17782 Hypothetical protein H14N18.3 [Caenorhabditis elegans] ref|NP_505304.1| H14N18.3 [Caenorhabditis elegans] 2.0E-76
blast CAE72048 Hypothetical protein CBG19132 [Caenorhabditis briggsae] 8.0E-67
blast CAE68491 Hypothetical protein CBG14296 [Caenorhabditis briggsae] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.6E-30
Sequence
Target Sequence 
>C. ELEGANS:185723_AT
ttttatgccttttggccgttgctgtagccgcaagtattattggaaagaaagctgttggag
caaaaggaacacttctctgtggaaacactccagcttcaaatgttagagtacgattgttcc
gtgtgaaaccaggaaagaaggatgatatcaaccaaatgctcgacgaagagtacactggac
cacaaggaatgttccatgtcgaaggaaacaccaatggattcccattaaatgaaacagatc
ttcatccagtactttctatctatcaccattgtgatgatgatccgaagaaattggagaaaa
ctgctttccgtcgattcaactatgttcttcccgacactttcgtgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTATGCCTTTTGGCCGTTGCTGT 498 673 29 Antisense
GCCGTTGCTGTAGCCGCAAGTATTA 600 283 43 Antisense
GAACACTTCTCTGTGGAAACACTCC 226 353 95 Antisense
GAGTACGATTGTTCCGTGTGAAACC 642 397 134 Antisense
GATATCAACCAAATGCTCGACGAAG 472 425 172 Antisense
GACGAAGAGTACACTGGACCACAAG 29 377 190 Antisense
ATCTTCATCCAGTACTTTCTATCTA 450 31 266 Antisense
GTACTTTCTATCTATCACCATTGTG 461 459 277 Antisense
AACTGCTTTCCGTCGATTCAACTAT 564 141 327 Antisense
GTCGATTCAACTATGTTCTTCCCGA 147 473 338 Antisense
TTCTTCCCGACACTTTCGTGAATCA 448 689 353 Antisense
Sequence Source Affymetrix Proprietary Database