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[185722_at]

Description K02E10.8 /REP_DB=WormBase Gene ID /WP=CE07320 /TR=Q21139 /GB=AAC47074.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 46      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 227.3
(3)
P 		179.7
(-1.2)
A 		159.6
(-3)
A 		160.6
(-2.9)
P 		68
B 267.6
(3)
P 		138.2
(-2)
A 		140.1
(-1.9)
A 		112.5
(-3)
P 		155
C 248.1
(3)
P 		181.2
(-1.3)
A 		154.3
(-3)
A 		175.7
(-1.6)
P 		94
avr 247.7
(3) 		166.4
(-2) 		151.3
(-2.9) 		149.6
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 256.1
(3)
M 		240.9
(2.2)
A 		152.2
(-2.2)
A 		155.3
(-2)
A 		162.3
(-1.7)
A 		135.1
(-3)
A 		121
B 228.7
(0.9)
A 		271.2
(3)
P 		177.4
(-1.5)
A 		178.9
(-1.5)
A 		155.5
(-2.6)
P 		147.3
(-3)
P 		124
C 209.1
(-0.1)
A 		276.3
(3)
P 		226.9
(0.7)
A 		215.6
(0.2)
A 		176.1
(-1.6)
A 		145.1
(-3)
P 		131
avr 231.3
(1.4) 		262.8
(3) 		185.5
(-0.9) 		183.3
(-1) 		164.6
(-1.9) 		142.5
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 82.8
(3)
P 		39
(-1.4)
A 		41.7
(-1.2)
A 		23.5
(-3)
P 		59
B 85.3
(3)
P 		34.1
(-2)
A 		32.5
(-2.2)
A 		24
(-3)
P 		61
C 82.1
(3)
P 		52.1
(-0.4)
A 		53.8
(-0.2)
A 		29.6
(-3)
P 		53
avr 83.4
(3) 		41.7
(-1.3) 		42.7
(-1.2) 		25.7
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 47.2
(-1.4)
M 		85.7
(3)
A 		33.1
(-3)
A 		39.4
(-2.3)
A 		49
(-1.2)
A 		32.9
(-3)
A 		53
B 79.6
(1.6)
A 		90.3
(3)
P 		43.1
(-3)
A 		47.4
(-2.5)
A 		63.2
(-0.4)
P 		54.9
(-1.5)
P 		47
C 77.5
(2)
A 		84.3
(3)
P 		57.7
(-0.9)
A 		43.3
(-3)
A 		57
(-1)
A 		48.6
(-2.2)
P 		41
avr 68.1
(0.4) 		86.8
(3) 		44.6
(-2.8) 		43.4
(-3) 		56.4
(-1.2) 		45.5
(-2.7) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18075
Sequence Type Exemplar sequence
Representative Public ID K02E10.8 NCBI
Target Description K02E10.8 /REP_DB=WormBase Gene ID /WP=CE07320 /TR=Q21139 /GB=AAC47074.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076056(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076056 NCBI Caenorhabditis elegans SYnaptoGenesis abnormal family member (syg-1) (syg-1) mRNA, complete cds. 10/11 None
K02E10.8 ENSEMBL cdna:known chromosome:CEL140:X:2509330:2515302:-1 gene:K02E10.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2509733-2515302(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol syg-1
Ensembl K02E10.8
Entrez Gene 180555 Entrez gene
SwissProt Q21139 EMBL-EBI
WormBase CE37121 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11006.1.S1_AT similar to kin of IRRE-like 2 isoform c cfa
CANINE_2:CFAAFFX.11006.1.S1_S_AT similar to kin of IRRE-like 2 isoform c cfa
CANINE_2:CFAAFFX.11015.1.S1_S_AT similar to kin of IRRE-like 2 isoform c cfa
DROSOPHILA_2:1633888_S_AT kin of irre dm
DROSGENOME1:144253_AT kin of irre dm
Protein Similarities
Method ID Description E-Value
blast AAC47074 Synaptogenesis abnormal protein 1 [Caenorhabditis elegans] ref|NP_508457.3| SYnaptoGenesis abnormal family member (syg-1) [Caenorhabditis elegans] 0.0
blast CAE58865 Hypothetical protein CBG02095 [Caenorhabditis briggsae] 0.0
blast EAA06357 ENSANGP00000012712 [Anopheles gambiae str. PEST] ref|XP_310916.2| ENSANGP00000012712 [Anopheles gambiae str. PEST] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0052
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0040
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508457.3 1 552-574
K02E10.8 1 552-574
Sequence
Target Sequence 
>C. ELEGANS:185722_AT
gacaacagaggcacactgctcaagaagagaaatattctagattggattgtaataacagca
aagttcgatagaatggttgcacttgcaattataagtgcaggtgttcttttggtgtcactg
ctctgctgcctctgcatgtgcagaagtaattgtcggtcaagaaagtcaaagtttattgat
gatcaatctgacgtcacagtgaaatgtgaggcattggatggacaatatttcccagagatg
tatagtagcagccccgttgacaatgttcatctctccacgaaggttggtcaaaagttggac
aatatgaagaaaaattcggattacatctcgattcctcaaaacaatccggatttggatttc
ctcggtgcaaccggatcattcgggccaccgggagggctgtatccaaaatgtttcaacaac
tcggccaatgaatacatctacaaccggagtttcagatatgtacggcgtggcgatgagcga
caaattgccggttatggagacgctacaggaagtggagactcccaaaacgtccaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACAGAGGCACACTGCTCAAGA 710 365 1426 Antisense
GTGCAGGTGTTCTTTTGGTGTCACT 498 479 1520 Antisense
CTCTGCTGCCTCTGCATGTGCAGAA 20 231 1546 Antisense
GATGTATAGTAGCAGCCCCGTTGAC 413 405 1662 Antisense
TTGACAATGTTCATCTCTCCACGAA 196 705 1682 Antisense
TTCGGATTACATCTCGATTCCTCAA 167 693 1740 Antisense
GGATTTGGATTTCCTCGGTGCAACC 209 509 1773 Antisense
AAATGTTTCAACAACTCGGCCAATG 522 119 1831 Antisense
GTACGGCGTGGCGATGAGCGACAAA 249 459 1885 Antisense
ATTGCCGGTTATGGAGACGCTACAG 463 7 1909 Antisense
TGGAGACTCCCAAAACGTCCAACTA 604 545 1938 Antisense
Sequence Source Affymetrix Proprietary Database