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[185719_at]

Description F09C12.6 /REP_DB=WormBase Gene ID /WP=CE01903 /TR=Q10054 /GB=AAA68347.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 23.5
(-1.9)
A 		38.5
(-0.7)
A 		10.2
(-3)
A 		83.3
(3)
A 		73
B 18.5
(-1.7)
A 		7.1
(-3)
A 		15
(-2.1)
A 		60.6
(3)
A 		54
C 13.7
(-2.5)
A 		6.7
(-3)
A 		26
(-1.7)
A 		94.8
(3)
A 		88
avr 18.6
(-2.9) 		17.4
(-3) 		17.1
(-3) 		79.6
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 67.8
(3)
A 		11.4
(-3)
A 		51.4
(1.3)
A 		35.1
(-0.5)
A 		25
(-1.6)
A 		16.5
(-2.5)
A 		56
B 54.4
(3)
A 		54.6
(3)
A 		32.2
(-0.3)
A 		19.3
(-2.2)
A 		43.7
(1.4)
A 		14.2
(-3)
A 		40
C 8.6
(-3)
A 		81.4
(3)
A 		20.1
(-2)
A 		24.3
(-1.7)
A 		8.4
(-3)
A 		10
(-2.9)
A 		73
avr 43.6
(2.1) 		49.1
(3) 		34.6
(0.5) 		26.2
(-0.9) 		25.7
(-1) 		13.6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.6
(0.7)
A 		8.3
(0.5)
A 		2.7
(-3)
A 		12.2
(3)
A 		10
B 5.9
(-0.8)
A 		1.8
(-3)
A 		3.5
(-2.1)
A 		12.9
(3)
A 		11
C 4.5
(-1.9)
A 		1.9
(-3)
A 		9.1
(0.1)
A 		16
(3)
A 		14
avr 6.3
(-1.6) 		4
(-3) 		5.1
(-2.3) 		13.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 12.5
(3)
A 		4.1
(-2.9)
A 		11.2
(2.1)
A 		8.9
(0.5)
A 		7.6
(-0.5)
A 		4
(-3)
A 		9
B 18.9
(3)
A 		18.2
(2.7)
A 		7.8
(-1.8)
A 		5.1
(-3)
A 		17.8
(2.5)
A 		5.3
(-2.9)
A 		14
C 3.2
(-2.9)
A 		24.8
(3)
A 		5.1
(-2.3)
A 		4.9
(-2.4)
A 		2.7
(-3)
A 		3.3
(-2.8)
A 		22
avr 11.5
(0.8) 		15.7
(3) 		8
(-1) 		6.3
(-1.9) 		9.4
(-0.3) 		4.2
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5877
Sequence Type Exemplar sequence
Representative Public ID F09C12.6 NCBI
Target Description F09C12.6 /REP_DB=WormBase Gene ID /WP=CE01903 /TR=Q10054 /GB=AAA68347.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062549 NCBI Caenorhabditis elegans F09C12.6 (F09C12.6) mRNA, complete cds. 11/11 None
GENEFINDER00000009152 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5116015:5117894:1 11/11 None
F09C12.6 ENSEMBL cdna:known chromosome:CEL140:II:5116857:5117614:1 gene:F09C12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009140 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5116854-5117612(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C12.6
Entrez Gene 184238 Entrez gene
SwissProt Q10054 EMBL-EBI
WormBase CE35456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59047 Hypothetical protein CBG02329 [Caenorhabditis briggsae] 1.0E-105
blast AAA68347 Hypothetical protein F09C12.6 [Caenorhabditis elegans] ref|NP_494950.2| F09C12.6 [Caenorhabditis elegans] 2.0E-81
blast AAA68347 Hypothetical protein F09C12.6 [Caenorhabditis elegans] ref|NP_494950.2| F09C12.6 [Caenorhabditis elegans] 4.0E-77
blast CAE59047 Hypothetical protein CBG02329 [Caenorhabditis briggsae] 2.0E-70
blast CAE59267 Hypothetical protein CBG02598 [Caenorhabditis briggsae] 1.0E-32
blast AAK31471 Hypothetical protein C30B5.7 [Caenorhabditis elegans] ref|NP_495243.1| C30B5.7 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494950.2 2 73-95,115-137
F09C12.6 2 73-95,115-137
GENEFINDER00000009152 4 29-51,61-78,165-187,207-229
Sequence
Target Sequence 
>C. ELEGANS:185719_AT
gaacttcctataagaaccgcctggcaatgtgctctggaaccatggctcattttgagagga
attggtaaaggagacatctggcctccagttgtgcaaatggtgattggaatacaaagagct
cttgcagtttttgctccaatttggtttcataaaaatggcaggaataggtttgaaaataat
gacatagcagtgggaataaaatttttaagatcaagttttctgtttgcatctactcttgtc
atcctacttccgactttactaattggctttgtgattgcatatcgaaaaaggaatgtgaag
gttctttattattgtggtcgaaaagcagcgtttggaaatgactatgccacatttatttac
atttgtaatatatccggatatttattcagttttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCCTATAAGAACCGCCTGGC 452 349 61 Antisense
AAGAACCGCCTGGCAATGTGCTCTG 169 153 72 Antisense
ATGTGCTCTGGAACCATGGCTCATT 665 49 87 Antisense
AGACATCTGGCCTCCAGTTGTGCAA 510 69 132 Antisense
AGCTCTTGCAGTTTTTGCTCCAATT 512 79 177 Antisense
AAGTTTTCTGTTTGCATCTACTCTT 349 157 273 Antisense
CATCCTACTTCCGACTTTACTAATT 388 211 300 Antisense
TAATTGGCTTTGTGATTGCATATCG 500 633 320 Antisense
GAAGGTTCTTTATTATTGTGGTCGA 175 335 357 Antisense
GACTATGCCACATTTATTTACATTT 318 373 400 Antisense
ATCCGGATATTTATTCAGTTTTCTT 457 39 432 Antisense
Sequence Source Affymetrix Proprietary Database