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[185718_at]

Description C14C6.13 /REP_DB=WormBase Gene ID /WP=CE08168 /TR=O44679 /GB=AAB94269.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 6.3
(-2.1)
A 		14
(3)
A 		4.9
(-3)
A 		5.6
(-2.5)
A 		9
B 28.3
(1.3)
A 		6.2
(-2.7)
A 		4.4
(-3)
A 		37.8
(3)
A 		33
C 25.6
(-0.6)
A 		3.8
(-3)
A 		4.3
(-2.9)
A 		59.2
(3)
A 		55
avr 20.1
(0.2) 		8
(-2.3) 		4.5
(-3) 		34.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.8
(-2.9)
A 		16.3
(0.5)
A 		12.5
(-0.6)
A 		3.6
(-3)
A 		25.6
(3)
A 		10.6
(-1.1)
A 		22
B 6.5
(-1.3)
A 		16
(2.4)
A 		2.6
(-2.8)
A 		2.1
(-3)
A 		17.6
(3)
A 		5.6
(-1.6)
A 		16
C 16.8
(1.7)
A 		20.7
(3)
A 		3.2
(-2.9)
A 		6.2
(-1.9)
A 		3
(-3)
A 		17.5
(1.9)
A 		18
avr 9
(-0.8) 		17.7
(3) 		6.1
(-2.1) 		4
(-3) 		15.4
(2) 		11.2
(0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.3
(1.1)
A 		3
(3)
A 		1.3
(-1.6)
A 		0.8
(-3)
A 		2
B 9
(3)
A 		1.5
(-2.6)
A 		1
(-3)
A 		8
(2.3)
A 		8
C 8.5
(2)
A 		1.1
(-3)
A 		1.5
(-2.7)
A 		10
(3)
A 		9
avr 6.6
(3) 		1.9
(-2.3) 		1.3
(-3) 		6.3
(2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-3)
A 		5.8
(1.4)
A 		2.7
(-1.3)
A 		0.9
(-2.8)
A 		7.7
(3)
A 		2.6
(-1.4)
A 		7
B 2.3
(-1.4)
A 		5.3
(1.3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		7.1
(3)
A 		2.1
(-1.6)
A 		7
C 6.2
(2.9)
A 		6.3
(3)
A 		0.8
(-3)
A 		1.2
(-2.6)
A 		1
(-2.8)
A 		5.9
(2.6)
A 		6
avr 3.1
(-0.3) 		5.8
(3) 		1.4
(-2.4) 		0.9
(-3) 		5.3
(2.4) 		3.5
(0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15962
Sequence Type Exemplar sequence
Representative Public ID C14C6.13 NCBI
Target Description C14C6.13 /REP_DB=WormBase Gene ID /WP=CE08168 /TR=O44679 /GB=AAB94269.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070848 NCBI Caenorhabditis elegans C14C6.13 (C14C6.13) mRNA, complete cds. 11/11 None
GENEFINDER00000017711 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:571432:572718:-1 11/11 None
C14C6.13 ENSEMBL cdna:known chromosome:CEL140:V:571860:574568:-1 gene:C14C6.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017702 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:571859-574568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.13
Entrez Gene 182607 Entrez gene
SwissProt O44679 EMBL-EBI
WormBase CE08168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94269 Hypothetical protein C14C6.13 [Caenorhabditis elegans] ref|NP_503249.1| C14C6.13 [Caenorhabditis elegans] 1.0E-177
blast AAB94269 Hypothetical protein C14C6.13 [Caenorhabditis elegans] ref|NP_503249.1| C14C6.13 [Caenorhabditis elegans] 1.0E-121
blast CAE65501 Hypothetical protein CBG10471 [Caenorhabditis briggsae] 4.0E-94
blast CAE65501 Hypothetical protein CBG10471 [Caenorhabditis briggsae] 9.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017711 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:185718_AT
cgctacgacacctctaacaatatttacaattactatcaagactataaaaactatttccgt
ccggttcgagttttgggctacgcctactatacgacgagtagtgtttggatgagtggagtt
gcgccgtttgtaaagccaaaccttcaaagtccggtttttaagactatatctgtcagattt
gacatgacacgggttttgacaaaaaatggctccaaatccttcgccatcagcattgacctg
atccgaacattggttgacgtggatggctggatccttacggataccgtactccctggcccg
atgagctcgcaaaacgagctcgacaacatcagagagctctgcgggcagagcgcattacag
aaatgttcagagaccagggatccgaacactgggttctatcgtcccattaactcagaaatt
cagtcgatgaatggaaaagaaaaagttggagattgtggatacttcctggccgatgtgtcc
ttgtgtttcccgcaggcgtcgcagttttattcatacattccaaagtacaataacaattcg
gtgatctacggcaactacaacgacggtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTACGACACCTCTAACAATATTT 108 249 289 Antisense
GAGTTTTGGGCTACGCCTACTATAC 697 395 356 Antisense
GGAGTTGCGCCGTTTGTAAAGCCAA 249 517 403 Antisense
AGCATTGACCTGATCCGAACATTGG 232 79 517 Antisense
GACGTGGATGGCTGGATCCTTACGG 685 365 544 Antisense
TCCTTACGGATACCGTACTCCCTGG 53 589 560 Antisense
TTCAGAGACCAGGGATCCGAACACT 74 687 654 Antisense
GAACACTGGGTTCTATCGTCCCATT 303 345 672 Antisense
GAGATTGTGGATACTTCCTGGCCGA 217 397 737 Antisense
GCAGGCGTCGCAGTTTTATTCATAC 382 311 780 Antisense
CTACGGCAACTACAACGACGGTGAA 649 223 834 Antisense
Sequence Source Affymetrix Proprietary Database