[Home] | [Total List]

[185716_at]

Description C16C4.15 /REP_DB=WormBase Gene ID /WP=CE08211 /TR=O16553 /GB=AAB93659.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 1.2
(-3)
A 		33.3
(1)
A 		15.1
(-1.3)
A 		49.8
(3)
M 		49
B 15.4
(-2.9)
A 		32.3
(0.1)
A 		15
(-3)
A 		48.8
(3)
P 		34
C 12.8
(-3)
A 		28.1
(-1.2)
A 		24.2
(-1.7)
A 		63.5
(3)
P 		51
avr 9.8
(-3) 		31.2
(-0.1) 		18.1
(-1.9) 		54
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 29
(-1.8)
A 		26.5
(-2.6)
M 		42.9
(2.8)
P 		41.6
(2.4)
A 		25.2
(-3)
P 		43.5
(3)
A 		18
B 9.6
(-3)
A 		34
(-0.7)
A 		52.8
(1.1)
P 		63
(2.1)
P 		29.1
(-1.1)
P 		72.7
(3)
P 		63
C 0.8
(-3)
A 		54.4
(2)
P 		60.1
(2.6)
P 		44.7
(1.1)
M 		36.2
(0.3)
A 		64.5
(3)
P 		64
avr 13.1
(-3) 		38.3
(0.2) 		51.9
(1.9) 		49.8
(1.7) 		30.2
(-0.8) 		60.2
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.4
(-3)
A 		7.2
(2.9)
A 		4
(0.1)
A 		7.3
(3)
M 		7
B 4.9
(-1.8)
A 		8
(0.9)
A 		3.5
(-3)
A 		10.4
(3)
P 		7
C 4.2
(-3)
A 		8.1
(0.6)
A 		8.4
(0.9)
A 		10.7
(3)
P 		7
avr 3.2
(-3) 		7.8
(1.4) 		5.3
(-1) 		9.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.3
(-3)
A 		9.4
(1.6)
M 		9.3
(1.5)
P 		10.5
(2.9)
A 		7.6
(-0.4)
P 		10.6
(3)
A 		5
B 3.3
(-3)
A 		11.3
(-1)
A 		12.8
(-0.6)
P 		16.7
(0.4)
P 		11.8
(-0.9)
P 		27.1
(3)
P 		24
C 0.3
(-3)
A 		16.6
(1.6)
P 		15.3
(1.2)
P 		9
(-0.5)
M 		11.7
(0.2)
A 		21.6
(3)
P 		21
avr 3
(-3) 		12.4
(0.4) 		12.5
(0.4) 		12.1
(0.3) 		10.4
(-0.4) 		19.8
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4835
Sequence Type Exemplar sequence
Representative Public ID C16C4.15 NCBI
Target Description C16C4.15 /REP_DB=WormBase Gene ID /WP=CE08211 /TR=O16553 /GB=AAB93659.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061702 NCBI Caenorhabditis elegans C16C4.15 (C16C4.15) mRNA, complete cds. 11/11 None
SNAP00000026900 ENSEMBL cdna:SNAP chromosome:CEL140:II:1871550:1875001:1 11/11 None
GENEFINDER00000026917 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1871550:1877239:1 11/11 None
C16C4.15 ENSEMBL cdna:known chromosome:CEL140:II:1871550:1873147:1 gene:C16C4.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1871548-1873146(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.15
Entrez Gene 182669 Entrez gene
SwissProt O16553 EMBL-EBI
WormBase CE08211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-167
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-160
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-157
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-115
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 1.0E-115
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-108
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-106
blast AAB93650 Hypothetical protein C16C4.3 [Caenorhabditis elegans] ref|NP_494105.1| C16C4.3 [Caenorhabditis elegans] 3.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 9.0E-34
Pfam IPR002083 EMBL-EBI MATH 1.5E-47
Pfam IPR002083 EMBL-EBI MATH 7.4E-26
Pfam IPR002083 EMBL-EBI MATH 4.6E-51
Pfam IPR002083 EMBL-EBI MATH 6.1E-11
Pfam IPR002083 EMBL-EBI MATH 4.6E-51
Pfam IPR002083 EMBL-EBI MATH 7.1E-52
Pfam IPR002083 EMBL-EBI MATH 1.6E-47
Sequence
Target Sequence 
>C. ELEGANS:185716_AT
tgaagccttgggatctattggagagtgattatgtggtggatgacagtattgtagtcgaag
cctatgttaaaattatcaaaatgactgatacaccatgtgacgaagacgagaatatagaaa
cgtttcttttaagcaatactgttaaaaatatttcaagcattgaagaaggagatgattatt
acactgaaatagcgacacgtcacaatgttccatggagaatgcaaatcaaaagaaataatg
gattttttgaattatatttgagatgtgaaaaggaggagcagcctgaatggggttggaaaa
tcgaattggattatgatctaagattggtgtctttgaatggacagagcctgagtcttactg
attcaggttctttcagtaagccattttgtgaaggtttcgaaaaattcatgagatggaata
ttatggaagagaattatatagtaaaggatagtatcattattgaagcacgtgggaaaatta
ctaaaatgattggatgtgacgacgattcgagcagtgacgatggagaagatgaatcgagca
aatcccattcagaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCTTGGGATCTATTGGAGAG 99 573 317 Antisense
ACAGTATTGTAGTCGAAGCCTATGT 19 109 359 Antisense
GACTGATACACCATGTGACGAAGAC 691 373 399 Antisense
AGCGACACGTCACAATGTTCCATGG 95 77 507 Antisense
AGGAGCAGCCTGAATGGGGTTGGAA 593 55 590 Antisense
GACAGAGCCTGAGTCTTACTGATTC 254 369 656 Antisense
GATTCAGGTTCTTTCAGTAAGCCAT 120 429 676 Antisense
TAAGCCATTTTGTGAAGGTTTCGAA 31 573 693 Antisense
ATGATTGGATGTGACGACGATTCGA 376 45 802 Antisense
GACGACGATTCGAGCAGTGACGATG 262 379 814 Antisense
ATCGAGCAAATCCCATTCAGAAAGT 534 35 849 Antisense
Sequence Source Affymetrix Proprietary Database