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[185715_s_at]

Description H24O09.2 /REP_DB=WormBase Gene ID /WP=CE23825 /TR=Q9N5K6 /GB=AAF39903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 34
(-3)
A 		46
(1.3)
A 		44.2
(0.7)
A 		50.6
(3)
A 		17
B 42.1
(2)
P 		32
(-0.9)
A 		24.6
(-3)
A 		45.5
(3)
P 		21
C 25
(-0.7)
A 		18.4
(-1.4)
A 		4.1
(-3)
A 		58
(3)
A 		54
avr 33.7
(-0.9) 		32.1
(-1.3) 		24.3
(-3) 		51.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 84.4
(3)
P 		32.4
(-2.5)
A 		41.4
(-1.5)
P 		34.2
(-2.3)
A 		27.4
(-3)
A 		67.9
(1.3)
P 		57
B 30.6
(-0.3)
A 		27.2
(-0.7)
A 		5.6
(-3)
A 		50.1
(1.8)
P 		30.8
(-0.3)
A 		61.2
(3)
P 		56
C 27
(-3)
A 		38.7
(0.5)
A 		35.4
(-0.5)
A 		47.2
(3)
A 		30.2
(-2)
A 		33.4
(-1.1)
P 		20
avr 47.3
(1.4) 		32.8
(-1.8) 		27.5
(-3) 		43.8
(0.7) 		29.5
(-2.6) 		54.2
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.4
(3)
A 		10
(0.1)
A 		11.6
(2)
A 		7.4
(-3)
A 		5
B 13.4
(3)
P 		7.9
(-1.3)
A 		5.7
(-3)
A 		9.7
(0.1)
P 		8
C 8.3
(1.9)
A 		5.3
(-0.2)
A 		1.4
(-3)
A 		9.8
(3)
A 		8
avr 11.4
(3) 		7.7
(-1.3) 		6.2
(-3) 		9
(0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15.6
(2.3)
P 		11.5
(-0.7)
A 		9
(-2.5)
P 		8.7
(-2.7)
A 		8.3
(-3)
A 		16.5
(3)
P 		8
B 10.6
(-0.4)
A 		9.1
(-0.8)
A 		1.4
(-3)
A 		13.3
(0.3)
P 		12.5
(0.1)
A 		22.8
(3)
P 		21
C 10
(-0.9)
A 		11.8
(3)
A 		9
(-3)
A 		9.5
(-1.9)
A 		9.8
(-1.3)
A 		11.2
(1.7)
P 		3
avr 12.1
(0.3) 		10.8
(-0.5) 		6.5
(-3) 		10.5
(-0.7) 		10.2
(-0.8) 		16.8
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15455
Sequence Type Exemplar sequence
Representative Public ID H24O09.2 NCBI
Target Description H24O09.2 /REP_DB=WormBase Gene ID /WP=CE23825 /TR=Q9N5K6 /GB=AAF39903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070904 NCBI Caenorhabditis elegans H24O09.2 (H24O09.2) mRNA, complete cds. 11/11 None
SNAP00000012486 ENSEMBL cdna:SNAP chromosome:CEL140:V:722572:723657:-1 11/11 None
H24O09.2 ENSEMBL cdna:known chromosome:CEL140:V:722525:723657:-1 gene:H24O09.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012490 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:722571-723657(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H24O09.2
Entrez Gene 178582 Entrez gene
SwissProt Q9N5K6 EMBL-EBI
WormBase CE23825 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39903 Hypothetical protein H24O09.2 [Caenorhabditis elegans] ref|NP_503305.1| H24O09.2 [Caenorhabditis elegans] 0.0
blast AAA81436 Hypothetical protein F40F4.1 [Caenorhabditis elegans] ref|NP_508559.1| F40F4.1 [Caenorhabditis elegans] 6.0E-67
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 2.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.4E-5
Sequence
Target Sequence 
>C. ELEGANS:185715_S_AT
atctaaggacaactactgcactcaagagttttgtgatgagttcaaggaactcgacgttca
aacttttgtgagccccttacaaatggacaactcttcgttctaccagaagatcataagaat
gttttcgagtagaagtaaaaggcttgacttcggtcttcccacattcccatttaaaactca
tacagctcaagagttcatgtttcaaaatttcaatttcttccaaatcttgtacaaatgcag
tcttgtagaggttctctccataaacagtactctaatatatggtgaagaccttattggcgt
gaatcagttgaacgtattcttgaggcattggatcaacggatccaacccaagactcgagta
ctttcaattttatgtgtatttacagacaagtttggaggacttgttctcgataatctttaa
caaggtgaattatcaaagacagccagatagccttttgagggcgttttgcctatcagttca
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTAAGGACAACTACTGCACTCAA 97 33 429 Antisense
TTCAAACTTTTGTGAGCCCCTTACA 222 683 485 Antisense
GCCCCTTACAAATGGACAACTCTTC 176 1 500 Antisense
TTCCCACATTCCCATTTAAAACTCA 290 697 584 Antisense
ATGCAGTCTTGTAGAGGTTCTCTCC 540 43 663 Antisense
GGTTCTCTCCATAAACAGTACTCTA 222 507 678 Antisense
GGTGAAGACCTTATTGGCGTGAATC 427 499 709 Antisense
GATCAACGGATCCAACCCAAGACTC 231 421 759 Antisense
AGGACTTGTTCTCGATAATCTTTAA 605 53 824 Antisense
AGACAGCCAGATAGCCTTTTGAGGG 344 71 865 Antisense
GAGGGCGTTTTGCCTATCAGTTCAA 282 401 885 Antisense
Sequence Source Affymetrix Proprietary Database