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[185714_at]

Description C24B9.13 /REP_DB=WormBase Gene ID /WP=CE17455 /TR=O76442 /GB=AAC19257.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 35      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 26.3
(-3)
A 		101.3
(3)
A 		38.5
(-2)
A 		90.1
(2.1)
A 		75
B 50.5
(-3)
A 		87.1
(3)
A 		51
(-2.9)
A 		63.4
(-0.9)
A 		37
C 43.2
(0.1)
A 		59.6
(1.5)
A 		7.5
(-3)
A 		77.2
(3)
P 		70
avr 40
(-2.1) 		82.7
(3) 		32.3
(-3) 		76.9
(2.3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 29.1
(-3)
A 		52.2
(0.3)
A 		60.6
(1.5)
A 		63.6
(1.9)
A 		68.8
(2.6)
M 		71.4
(3)
A 		42
B 52.3
(1.3)
A 		65.1
(3)
A 		32.5
(-1.4)
A 		37
(-0.8)
A 		51.5
(1.2)
A 		20.4
(-3)
A 		45
C 36
(-0.7)
A 		51.9
(0.4)
A 		72.7
(2)
A 		86.6
(3)
A 		49.6
(0.3)
A 		5.5
(-3)
A 		81
avr 39.1
(-1.7) 		56.4
(1.8) 		55.3
(1.6) 		62.4
(3) 		56.6
(1.8) 		32.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.6
(-3)
A 		22
(3)
A 		10.1
(-2.8)
A 		13.2
(-1.3)
A 		12
B 16.1
(-0.3)
A 		21.5
(3)
A 		11.8
(-3)
A 		13.5
(-1.9)
A 		10
C 14.3
(1.8)
A 		17.1
(3)
A 		2.6
(-3)
A 		13
(1.3)
P 		15
avr 13.3
(-0.4) 		20.2
(3) 		8.2
(-3) 		13.2
(-0.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.4
(-3)
A 		18.6
(2.1)
A 		13.2
(0)
A 		16.1
(1.2)
A 		20.8
(3)
M 		17.4
(1.7)
A 		15
B 18.2
(1.5)
A 		21.7
(3)
A 		7.9
(-2.9)
A 		9.8
(-2.1)
A 		20.9
(2.7)
A 		7.6
(-3)
A 		14
C 13.4
(1.2)
A 		15.8
(2)
A 		18.5
(3)
A 		17.4
(2.6)
A 		16.1
(2.1)
A 		1.8
(-3)
A 		17
avr 12.3
(-1) 		18.7
(2.7) 		13.2
(-0.5) 		14.4
(0.2) 		19.3
(3) 		8.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15810
Sequence Type Exemplar sequence
Representative Public ID C24B9.13 NCBI
Target Description C24B9.13 /REP_DB=WormBase Gene ID /WP=CE17455 /TR=O76442 /GB=AAC19257.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028499
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038291 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2740271:2746085:-1 9/11 None
C24B9.13 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2744840:2746774:-1 gene:C24B9.13 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2745423-2749933(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24B9.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19246 Serpentine receptor, class g (gamma) protein 62 [Caenorhabditis elegans] ref|NP_503745.2| Serpentine Receptor, class G (gamma) family member (srg-62) [Caenorhabditis elegans] 1.0E-119
blast NP_503747 Serpentine Receptor, class X family member (srx-26) [Caenorhabditis elegans] gb|AAF39948.1| Serpentine receptor, class x protein 26 [Caenorhabditis elegans] 2.0E-91
blast AAC19257 Serpentine receptor, class x protein 24 [Caenorhabditis elegans] ref|NP_001023670.1| Serpentine Receptor, class X family member (srx-24) [Caenorhabditis elegans] 1.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038291 11 13-35,56-78,103-125,185-207,251-273,282-304,336-358,365-383,417-439,549-566,586-608
Sequence
Target Sequence 
>C. ELEGANS:185714_AT
aaatttctgaactgccgtccagtcttctggtcaaacattcacatttcattagagtcgcga
tcgagtttatttacgagatttcaaaaataacacatttcttaattgcactcaaccgatgct
gtgctatgtatataccgtcttactacgcgccaattttttgcgtcaccaaaaccaggttct
atctaacttttgtgtggttggtatctattatcggatgcacggccatttatgaagttgcaa
gctgtcatatagactatgattccaaactctggaattttcaatttgttgaaatctctaaat
tttgcgaggagatcacatggtattctgattttctcatcaacgtaataatcaccgttacca
cattgaatcttgacctactggcagcctataaaggcaaaaaactatcacgagctcttttaa
gtgccgctggcttaggcatttctgaagttcaacgcaagagggaatggaatttcataaagc
agacttgttttcaagacttgtgcaattggttagcagtgctttcatactatatattcgcct
cgtttattcatgaagattgggtccttttcaaattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTCTGAACTGCCGTCCAGTCT 667 113 944 Antisense
TGCCGTCCAGTCTTCTGGTCAAACA 196 585 956 Antisense
ACTCAACCGATGCTGTGCTATGTAT 73 101 1050 Antisense
TGTATATACCGTCTTACTACGCGCC 10 561 1070 Antisense
AACCAGGTTCTATCTAACTTTTGTG 571 141 1113 Antisense
ATTATCGGATGCACGGCCATTTATG 641 13 1150 Antisense
GTTACCACATTGAATCTTGACCTAC 172 447 1297 Antisense
TCACGAGCTCTTTTAAGTGCCGCTG 558 625 1348 Antisense
AGTGCCGCTGGCTTAGGCATTTCTG 102 61 1363 Antisense
ATATATTCGCCTCGTTTATTCATGA 572 19 1472 Antisense
GAAGATTGGGTCCTTTTCAAATTCT 7 339 1495 Antisense
Sequence Source Affymetrix Proprietary Database