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[185713_at]

Description C33A12.16 /REP_DB=WormBase Gene ID /WP=CE15669 /TR=Q18362 /GB=CAA92799.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 12.4
(-1.3)
A 		32.1
(3)
A 		19.1
(0.2)
A 		4.6
(-3)
A 		28
B 11.5
(-3)
A 		11.9
(-2.9)
A 		28.5
(3)
A 		14.8
(-1.8)
A 		17
C 27.1
(-0.4)
A 		15.9
(-2.3)
A 		11.5
(-3)
A 		47.6
(3)
P 		36
avr 17
(-3) 		20
(0.4) 		19.7
(0.1) 		22.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 35.2
(1.6)
A 		15.2
(-1.5)
A 		27.6
(0.4)
A 		5.1
(-3)
A 		44.6
(3)
A 		22.5
(-0.4)
A 		40
B 7.2
(-3)
A 		7.6
(-2.9)
A 		38.8
(3)
A 		9.6
(-2.5)
A 		26.1
(0.6)
A 		8.7
(-2.7)
A 		32
C 42.3
(1.5)
A 		14.9
(-1.6)
A 		55.6
(3)
P 		27
(-0.2)
A 		4.7
(-2.7)
A 		2.4
(-3)
A 		53
avr 28.2
(0.5) 		12.6
(-2.7) 		40.7
(3) 		13.9
(-2.5) 		25.1
(-0.2) 		11.2
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.5
(0.6)
A 		7
(3)
A 		5
(1.1)
A 		0.7
(-3)
A 		6
B 3.7
(-1.7)
A 		2.9
(-3)
A 		6.6
(3)
A 		3.1
(-2.7)
A 		4
C 9
(3)
A 		4.6
(-2.3)
A 		4
(-3)
A 		8
(1.8)
P 		5
avr 5.7
(3) 		4.8
(-0) 		5.2
(1.3) 		3.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.5
(-0.4)
A 		5.4
(-1)
A 		6
(-0.7)
A 		1.3
(-3)
A 		13.4
(3)
A 		5.5
(-0.9)
A 		12
B 2.5
(-3)
A 		2.5
(-3)
A 		9.4
(2.1)
A 		2.6
(-2.9)
A 		10.6
(3)
A 		3.3
(-2.4)
A 		8
C 15.7
(3)
A 		4.5
(-1.5)
A 		14.1
(2.4)
P 		5.4
(-1.1)
A 		1.5
(-2.7)
A 		0.8
(-3)
A 		15
avr 8.2
(1.6) 		4.1
(-2.1) 		9.8
(3) 		3.1
(-3) 		8.5
(1.8) 		3.2
(-2.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9649
Sequence Type Exemplar sequence
Representative Public ID C33A12.16 NCBI
Target Description C33A12.16 /REP_DB=WormBase Gene ID /WP=CE15669 /TR=Q18362 /GB=CAA92799.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069281(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069281 NCBI Caenorhabditis elegans C33A12.16 (C33A12.16) mRNA, complete cds. 10/11 None
SNAP00000009023 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9500179:9506303:-1 10/11 None
GENEFINDER00000009042 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9504085:9508675:-1 9/11 None
C33A12.16 ENSEMBL cdna:known chromosome:CEL140:IV:9504085:9505269:-1 gene:C33A12.16 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9503957-9505275(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33A12.16
Entrez Gene 183148 Entrez gene
SwissProt Q18362 EMBL-EBI
WormBase CE32157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92799 Hypothetical protein C33A12.16 [Caenorhabditis elegans] ref|NP_501682.2| C33A12.16 [Caenorhabditis elegans] 1.0E-144
blast CAA92800 Hypothetical protein C33A12.7 [Caenorhabditis elegans] ref|NP_501684.1| C33A12.7 [Caenorhabditis elegans] 1.0E-95
blast CAA92799 Hypothetical protein C33A12.16 [Caenorhabditis elegans] ref|NP_501682.2| C33A12.16 [Caenorhabditis elegans] 3.0E-90
blast CAA92799 Hypothetical protein C33A12.16 [Caenorhabditis elegans] ref|NP_501682.2| C33A12.16 [Caenorhabditis elegans] 8.0E-88
blast CAE72759 Hypothetical protein CBG20009 [Caenorhabditis briggsae] 1.0E-82
blast CAA92798 Hypothetical protein C33A12.15 [Caenorhabditis elegans] ref|NP_501683.2| C33A12.15 [Caenorhabditis elegans] 5.0E-57
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 5.0E-32
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 5.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.9E-36
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.6E-41
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.5E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501682.2 1 21-43
C33A12.16 1 21-43
SNAP00000009023 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:185713_AT
tcacaggacctgttacacaacttaaaaaaggctcgaaagttgcatttaaggtagaaactg
ataatgatacttgtccaactggaattaacccaccaacatttaataataacaatgcaacgg
gatctttgtatgtaactgatttggacacaagaaagacacctacatggatatactatgacg
tttatctaacaggcaatctctggtacagtctagattcaactggatacactttggaatttt
cgcgctcactttgtaaaaatgtctcatctagccttgctgttctcaattatccagaagatt
ttacgttccttgtcggtaaggatattcaatcgttgagattaaacctatctgtgatttcag
aacgcagtcaatcacttcgaagtatgatgcaactgcctaacacttatatgagattggatg
gagtgcggtcgagtgcatgccaatcaactccatcaagtaatacatgcgtgactgtaaagg
ggtttatttttgctacaactctgaacagcttcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAGGACCTGTTACACAACTTAA 180 629 317 Antisense
ACAGGCAATCTCTGGTACAGTCTAG 255 107 505 Antisense
ACACTTTGGAATTTTCGCGCTCACT 295 111 542 Antisense
AAAAATGTCTCATCTAGCCTTGCTG 606 129 571 Antisense
TAGCCTTGCTGTTCTCAATTATCCA 311 651 585 Antisense
CAGAAGATTTTACGTTCCTTGTCGG 262 203 608 Antisense
GAACGCAGTCAATCACTTCGAAGTA 469 347 676 Antisense
GATGCAACTGCCTAACACTTATATG 624 411 702 Antisense
GATGGAGTGCGGTCGAGTGCATGCC 329 407 733 Antisense
GAGTGCATGCCAATCAACTCCATCA 19 401 747 Antisense
GCTACAACTCTGAACAGCTTCGCAA 82 303 808 Antisense
Sequence Source Affymetrix Proprietary Database