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[185712_at]

Description Y102A5D.1 /REP_DB=WormBase Gene ID /WP=CE19291 /TR=Q9XX64 /GB=CAA20973.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 12.8
(-2.5)
A 		8.9
(-3)
A 		11.5
(-2.7)
A 		59
(3)
A 		50
B 72.1
(3)
A 		31.9
(-0.5)
A 		3.3
(-3)
A 		48.8
(1)
A 		69
C 22.5
(-2.2)
A 		75.3
(3)
A 		22.9
(-2.2)
A 		14.4
(-3)
A 		61
avr 35.8
(2) 		38.7
(2.6) 		12.6
(-3) 		40.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 3.3
(-3)
A 		5.4
(-1.1)
A 		4.8
(-1.6)
A 		5.6
(-0.9)
A 		9.8
(3)
A 		5.1
(-1.3)
A 		7
B 5.1
(-3)
A 		55
(3)
A 		7.8
(-2.7)
A 		8.7
(-2.6)
A 		11
(-2.3)
A 		14.6
(-1.9)
A 		50
C 16.1
(3)
A 		7.3
(-2.1)
A 		5.8
(-3)
A 		9
(-1.1)
A 		7
(-2.3)
A 		10.4
(-0.3)
A 		10
avr 8.2
(-2.2) 		22.6
(3) 		6.1
(-3) 		7.8
(-2.4) 		9.3
(-1.8) 		10
(-1.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.7
(-0.5)
A 		1.9
(-3)
A 		3
(-2)
A 		8.6
(3)
A 		7
B 23
(3)
A 		7.9
(-1.1)
A 		0.8
(-3)
A 		10.4
(-0.4)
A 		22
C 7.5
(-1.4)
A 		21.7
(3)
A 		8
(-1.3)
A 		2.4
(-3)
A 		19
avr 11.7
(3) 		10.5
(2.1) 		3.9
(-3) 		7.1
(-0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.9
(0.4)
A 		1
(-2)
A 		1.4
(-0.9)
A 		2.9
(3)
A 		1.2
(-1.4)
A 		2
B 1.8
(-3)
A 		18.3
(3)
A 		1.9
(-3)
A 		2.3
(-2.8)
A 		4.5
(-2)
A 		5.5
(-1.7)
A 		17
C 6
(3)
A 		2.2
(-2.1)
A 		1.5
(-3)
A 		1.8
(-2.6)
A 		2.3
(-1.9)
A 		3.5
(-0.3)
A 		5
avr 2.8
(-1.7) 		7.5
(3) 		1.5
(-3) 		1.8
(-2.7) 		3.2
(-1.3) 		3.4
(-1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14448
Sequence Type Exemplar sequence
Representative Public ID Y102A5D.1 NCBI
Target Description Y102A5D.1 /REP_DB=WormBase Gene ID /WP=CE19291 /TR=Q9XX64 /GB=CAA20973.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074937 NCBI Caenorhabditis elegans Y102A5D.1 (Y102A5D.1) mRNA, complete cds. 11/11 None
GENEFINDER00000024702 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17144783:17146463:-1 11/11 None
Y102A5D.1 ENSEMBL cdna:known chromosome:CEL140:V:17144783:17146463:-1 gene:Y102A5D.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024697 7/11 Cross Hyb Matching Probes None
SNAP00000024698 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17144782-17146463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5D.1
Entrez Gene 190856 Entrez gene
SwissProt Q9XX64 EMBL-EBI
WormBase CE19291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20973 Hypothetical protein Y102A5D.1 [Caenorhabditis elegans] ref|NP_507338.1| Y102A5D.1 [Caenorhabditis elegans] 0.0
blast CAA82361 Hypothetical protein T26G10.4 [Caenorhabditis elegans] ref|NP_499071.1| T26G10.4 [Caenorhabditis elegans] sp|P34583|YN24_CAEEL Hypothetical protein T26G10.4 in chromosome III 6.0E-72
blast T25352 hypothetical protein T27C5.9 - Caenorhabditis elegans 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:185712_AT
caaggcactcaagctcagattcacagaaggaaagcctgtgaaaagcgaagtggtgagagt
ggtgcagcagaatccaggcagcaataaatttgtcaaccatggagggtacctaccactggc
ctgccaccgttttgtgcatagggccctgctcaaccttctggcttgcaactacaactcgtt
cgaccagacacgaagaaaggagtacagaagccggtggaaaaaaagtaatactggcggctg
tcacctgcctttacgaacatggaaccgaagcgatgaaacgaagttgaaaagggaacgtgg
aaaaatacgaagctggcttcaaccacatgcgcaaaatgagaatcaagctgtctgtcctgt
cgatcgtcatttggcttccttgaaaagcgtcatcccagaactctgtgccacagtaatgga
acagagcaaaaacgctttctggaatcacatctttggagataaatacaccgacgtccccac
agaacttggacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGCACTCAAGCTCAGATTCACA 471 183 702 Antisense
ACCATGGAGGGTACCTACCACTGGC 230 87 797 Antisense
GCCACCGTTTTGTGCATAGGGCCCT 434 277 824 Antisense
GCAACTACAACTCGTTCGACCAGAC 655 319 866 Antisense
AAAGTAATACTGGCGGCTGTCACCT 660 121 923 Antisense
GTCACCTGCCTTTACGAACATGGAA 552 465 941 Antisense
ACGAAGCTGGCTTCAACCACATGCG 243 91 1008 Antisense
TGAGAATCAAGCTGTCTGTCCTGTC 399 569 1038 Antisense
GATCGTCATTTGGCTTCCTTGAAAA 692 417 1063 Antisense
ATCCCAGAACTCTGTGCCACAGTAA 644 35 1093 Antisense
CGACGTCCCCACAGAACTTGGACAT 191 229 1170 Antisense
Sequence Source Affymetrix Proprietary Database