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[185711_at]

Description T15B7.14 /REP_DB=WormBase Gene ID /WP=CE13672 /TR=O17037 /GB=AAB69967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 14.8
(-1.3)
A 		21.7
(-0.2)
A 		4.3
(-3)
A 		42
(3)
A 		38
B 11.2
(1.8)
A 		2.9
(-3)
A 		13.2
(3)
A 		9.3
(0.7)
A 		10
C 1.7
(-2.9)
A 		1.2
(-3)
A 		5.7
(-2.4)
A 		47
(3)
P 		46
avr 9.2
(-2.6) 		8.6
(-2.8) 		7.7
(-3) 		32.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 23
(3)
A 		1.2
(-3)
A 		2.6
(-2.6)
A 		8.2
(-1.1)
A 		3.6
(-2.3)
A 		16.2
(1.1)
A 		22
B 0.9
(-3)
A 		7.4
(1.3)
A 		2.9
(-1.7)
A 		8.3
(1.9)
A 		1.7
(-2.5)
A 		10
(3)
A 		9
C 1.4
(-3)
A 		26
(3)
A 		7.7
(-1.5)
A 		4.8
(-2.2)
A 		2.1
(-2.8)
A 		26.2
(3)
A 		25
avr 8.4
(-0.6) 		11.5
(0.6) 		4.4
(-2.2) 		7.1
(-1.2) 		2.5
(-3) 		17.5
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.4
(2.2)
A 		4.7
(1.3)
A 		1.1
(-3)
A 		6.1
(3)
A 		5
B 3.6
(3)
A 		0.7
(-3)
A 		3.1
(2)
A 		2
(-0.3)
A 		3
C 0.6
(-2.8)
A 		0.3
(-3)
A 		2
(-1.7)
A 		7.9
(3)
P 		8
avr 3.2
(-0.7) 		1.9
(-3) 		2.1
(-2.6) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.2
(3)
A 		0.4
(-3)
A 		0.6
(-2.7)
A 		2.1
(-0.3)
A 		1.1
(-1.9)
A 		3.9
(2.5)
A 		4
B 0.3
(-3)
A 		2.5
(0.9)
A 		0.7
(-2.3)
A 		2.2
(0.4)
A 		0.7
(-2.3)
A 		3.7
(3)
A 		3
C 0.5
(-3)
A 		7.9
(2.3)
A 		2
(-1.9)
A 		1
(-2.6)
A 		0.7
(-2.9)
A 		8.8
(3)
A 		8
avr 1.7
(-1.9) 		3.6
(0.6) 		1.1
(-2.6) 		1.8
(-1.7) 		0.8
(-3) 		5.5
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11446
Sequence Type Exemplar sequence
Representative Public ID T15B7.14 NCBI
Target Description T15B7.14 /REP_DB=WormBase Gene ID /WP=CE13672 /TR=O17037 /GB=AAB69967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072336 NCBI Caenorhabditis elegans T15B7.14 (T15B7.14) mRNA, complete cds. 11/11 None
GENEFINDER00000035398 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6834884:6837866:-1 11/11 None
T15B7.14 ENSEMBL cdna:known chromosome:CEL140:V:6834884:6837936:-1 gene:T15B7.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035389 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6834884-6837937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.14
Entrez Gene 188524 Entrez gene
SwissProt O17037 EMBL-EBI
WormBase CE35770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69967 Hypothetical protein T15B7.14 [Caenorhabditis elegans] ref|NP_504737.2| T15B7.14 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504737.2 5 93-115,130-152,339-361,386-408,587-609
T15B7.14 5 93-115,130-152,339-361,386-408,587-609
GENEFINDER00000035398 4 86-108,290-312,337-359,557-579
Sequence
Target Sequence 
>C. ELEGANS:185711_AT
gaaactgttctcgaggagcttttagcattaaatccacaagaattattgaaaaataatgat
gaaacatacgtgcgagtgttaaattcgatagatgcgatgaaagatcaacttaaactgact
gtggattatcatacgccaatcaaagaattatgtgacaatttagaggtattatttttggaa
aacactaaaggatggattgctaaaataaactgtgaagaaatcgagaaaatagttaatctg
tgtgtggttggaaaagtagaatgcttctactgtggttttgaaagggatcgaattcaggca
tccattgcggccagtaaaattagagagttgagtctaactgtcgcgaatagaactggcaat
gatctggaagattttaaatatcttcatgaaaaatatcgtttgcaaatgtggaattatttt
gtggcacctatcacttttcttgaagttccatgcatcattcttcttatctcgatttatgta
cttagcttcatgttgatggcttcaatatctatagtggaaacgaaagaccctgatgattcg
agcttggatagatatcaatattaccagttccatacggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGTTCTCGAGGAGCTTTTAG 108 357 1291 Antisense
GACTGTGGATTATCATACGCCAATC 35 377 1407 Antisense
AATTCAGGCATCCATTGCGGCCAGT 609 175 1581 Antisense
GAGAGTTGAGTCTAACTGTCGCGAA 596 395 1613 Antisense
TGTGGCACCTATCACTTTTCTTGAA 346 553 1710 Antisense
CTTTTCTTGAAGTTCCATGCATCAT 143 223 1724 Antisense
CATGCATCATTCTTCTTATCTCGAT 260 211 1739 Antisense
ATCTCGATTTATGTACTTAGCTTCA 505 33 1756 Antisense
CTTAGCTTCATGTTGATGGCTTCAA 184 221 1771 Antisense
AGACCCTGATGATTCGAGCTTGGAT 493 69 1815 Antisense
TCAATATTACCAGTTCCATACGGCT 673 631 1845 Antisense
Sequence Source Affymetrix Proprietary Database