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[185710_at] 7TM chemoreceptor, srg family

Description C24B9.10 /REP_DB=WormBase Gene ID /WP=CE17452 /TR=O76439 /GB=AAC19256.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 10      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 24.7
(-3)
A 		48.7
(-1)
A 		29.7
(-2.6)
A 		96.9
(3)
A 		72
B 22.7
(-3)
A 		31.3
(-2.3)
A 		37.7
(-1.8)
A 		95.9
(3)
P 		73
C 49.8
(-1.6)
A 		42
(-2)
A 		17.7
(-3)
A 		157.6
(3)
P 		140
avr 32.4
(-2.7) 		40.7
(-2.2) 		28.4
(-3) 		116.8
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 46.9
(-0.3)
A 		21.4
(-2.5)
A 		85
(3)
P 		15.4
(-3)
A 		32.8
(-1.5)
A 		35.7
(-1.3)
P 		70
B 33.9
(-0.5)
A 		49.3
(3)
A 		23.5
(-2.8)
A 		43.5
(1.7)
A 		46.7
(2.4)
A 		22.6
(-3)
A 		27
C 19
(-3)
A 		60.6
(3)
A 		40.4
(0.1)
M 		54.8
(2.2)
A 		21.7
(-2.6)
A 		39.6
(-0)
P 		42
avr 33.3
(-2.8) 		43.8
(1) 		49.6
(3) 		37.9
(-1.1) 		33.7
(-2.6) 		32.6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9
(-1.9)
A 		10.6
(-0.4)
A 		7.8
(-3)
A 		14.2
(3)
A 		6
B 7.2
(-3)
A 		7.7
(-2.8)
A 		8.7
(-2.3)
A 		20.4
(3)
P 		13
C 16.5
(0)
A 		12.1
(-1.3)
A 		6.2
(-3)
A 		26.6
(3)
P 		20
avr 10.9
(-1.5) 		10.1
(-1.8) 		7.6
(-3) 		20.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.6
(-1.1)
A 		7.6
(-1.5)
A 		18.5
(3)
P 		3.9
(-3)
A 		9.9
(-0.5)
A 		8.7
(-1)
P 		15
B 11.8
(-0.2)
A 		16.4
(1.8)
A 		5.7
(-3)
A 		11.5
(-0.4)
A 		19
(3)
A 		8.4
(-1.8)
A 		13
C 7
(-3)
A 		18.5
(3)
A 		10.3
(-1.3)
M 		11
(-0.9)
A 		7
(-3)
A 		13.3
(0.3)
P 		12
avr 9.1
(-2.7) 		14.2
(3) 		11.5
(0) 		8.8
(-3) 		12
(0.6) 		10.1
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15473
Sequence Type Exemplar sequence
Representative Public ID C24B9.10 NCBI
Target Description C24B9.10 /REP_DB=WormBase Gene ID /WP=CE17452 /TR=O76439 /GB=AAC19256.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071342 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-57) (srg-57) mRNA, complete cds. 11/11 None
C24B9.14 ENSEMBL cdna:known chromosome:CEL140:V:2732057:2734287:-1 gene:C24B9.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2732164-2738101(-) 98.7 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-57
Ensembl C24B9.14
Entrez Gene 182842 Entrez gene
SwissProt Q86B37 EMBL-EBI
WormBase CE33274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO26013 Serpentine receptor, class g (gamma) protein 57 [Caenorhabditis elegans] ref|NP_503743.2| Serpentine Receptor, class G (gamma) family member (srg-57) [Caenorhabditis elegans] 1.0E-157
blast AAO26012 Serpentine receptor, class g (gamma) protein 56 [Caenorhabditis elegans] ref|NP_872216.1| Serpentine Receptor, class G (gamma) family member (srg-56) [Caenorhabditis elegans] 1.0E-117
blast NP_872224 Serpentine Receptor, class G (gamma) family member (srg-65) [Caenorhabditis elegans] gb|AAO26002.1| Serpentine receptor, class g (gamma) protein 65 [Caenorhabditis elegans] 2.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503743.2 5 25-47,141-163,189-211,224-241,261-280
C24B9.14 5 25-47,141-163,189-211,224-241,261-280
Sequence
Target Sequence 
>C. ELEGANS:185710_AT
acatgcaattcctgttggcagcagttttgaatattcatcgcatttcttcaattttatttc
caatgagttgtgaaaagttctggtgtcgctactacattctagtgaccttagccttttgca
tatacagttatcttcctcgctttttgtgggcttcgaagtttacggttgaagtcaaaatca
tcaatggcacactgacaaagttccggtatcccgatgtaatggatcaggctatcaacgtaa
ctgcagtccttaacgttgtctattttatattaattataataattgtggtctccgaatcca
atcttgtggtaaagcgaaagctgtcaaaaatctcaatgacctattgttcaatcttcgctg
ttcaacttacttggacaattgtgaacagtttgaattcgaatttcagtttatttcctgata
taattctgaatgtaaatacatatctcctcacagtggtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGCAATTCCTGTTGGCAGCAGT 34 107 1331 Antisense
GAATATTCATCGCATTTCTTCAATT 647 325 1359 Antisense
TTCTGGTGTCGCTACTACATTCTAG 139 695 1408 Antisense
GTGACCTTAGCCTTTTGCATATACA 382 483 1432 Antisense
TGCATATACAGTTATCTTCCTCGCT 151 579 1447 Antisense
GGCACACTGACAAAGTTCCGGTATC 283 533 1516 Antisense
GGCTATCAACGTAACTGCAGTCCTT 544 537 1557 Antisense
ACTGCAGTCCTTAACGTTGTCTATT 56 99 1570 Antisense
TGTGGTCTCCGAATCCAATCTTGTG 339 555 1614 Antisense
TTCAATCTTCGCTGTTCAACTTACT 317 685 1677 Antisense
ATACATATCTCCTCACAGTGGTCTC 237 25 1766 Antisense
Sequence Source Affymetrix Proprietary Database