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[185709_at]

Description Y106G6G.1 /REP_DB=WormBase Gene ID /WP=CE23211 /TR=Q23311 /GB=CAB00066.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 51.8
(-3)
A 		64.9
(-1.9)
A 		56.6
(-2.6)
A 		124.2
(3)
A 		72
B 27.5
(-3)
A 		34.1
(-1.5)
A 		32.5
(-1.8)
A 		53.1
(3)
A 		26
C 47.8
(0.3)
A 		66.1
(1.9)
A 		10.7
(-3)
A 		77.9
(3)
A 		67
avr 42.4
(-1.9) 		55
(-0.5) 		33.3
(-3) 		85.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 64.9
(-0.4)
A 		49.1
(-1.1)
A 		8.7
(-3)
A 		51.1
(-1)
P 		137.9
(3)
P 		88.2
(0.7)
P 		129
B 10.2
(-3)
A 		34.7
(-2.1)
A 		50.5
(-1.5)
A 		67.3
(-0.8)
A 		167.9
(3)
P 		130.7
(1.6)
P 		158
C 50.9
(-2.4)
A 		42.5
(-3)
A 		41.9
(-3)
A 		74.6
(-0.9)
A 		97.1
(0.5)
P 		137.5
(3)
P 		96
avr 42
(-2.5) 		42.1
(-2.5) 		33.7
(-3) 		64.3
(-1.2) 		134.3
(3) 		118.8
(2.1) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 18.8
(3)
A 		14.1
(-3)
A 		14.8
(-2.1)
A 		18.2
(2.2)
A 		5
B 8.8
(-0.9)
A 		8.4
(-1.6)
A 		7.5
(-3)
A 		11.3
(3)
A 		4
C 15.8
(1.7)
A 		19
(3)
A 		3.7
(-3)
A 		13.1
(0.7)
A 		15
avr 14.5
(3) 		13.8
(2.3) 		8.7
(-3) 		14.2
(2.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 12
(-1.5)
A 		17.5
(-0.6)
A 		1.9
(-3)
A 		13
(-1.3)
P 		41.6
(3)
P 		21.5
(-0)
P 		40
B 3.6
(-3)
A 		11.6
(-2.3)
A 		12.3
(-2.2)
A 		17.8
(-1.7)
A 		68.2
(3)
P 		48.7
(1.2)
P 		65
C 18.9
(-1.6)
A 		13
(-2.6)
A 		10.7
(-3)
A 		15
(-2.3)
A 		31.4
(0.5)
P 		46
(3)
P 		35
avr 11.5
(-2.5) 		14
(-2.1) 		8.3
(-3) 		15.3
(-1.9) 		47.1
(3) 		38.7
(1.7) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1893
Sequence Type Exemplar sequence
Representative Public ID Y106G6G.1 NCBI
Target Description Y106G6G.1 /REP_DB=WormBase Gene ID /WP=CE23211 /TR=Q23311 /GB=CAB00066.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060306 NCBI Caenorhabditis elegans Y106G6G.1 (Y106G6G.1) mRNA, complete cds. 11/11 None
SNAP00000018732 ENSEMBL cdna:SNAP chromosome:CEL140:I:10337420:10338456:1 11/11 None
GENEFINDER00000018745 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10337474:10339820:1 11/11 None
Y106G6G.1 ENSEMBL cdna:known chromosome:CEL140:I:10337149:10338492:1 gene:Y106G6G.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10337089-10338387(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6G.1
Entrez Gene 172900 Entrez gene
SwissProt Q23311 EMBL-EBI
WormBase CE23211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00066 Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] emb|CAA22057.1| Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] ref|NP_492707.1| Y106G6G.1 [Caenorhabditis elegans] 0.0
blast CAB00066 Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] emb|CAA22057.1| Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] ref|NP_492707.1| Y106G6G.1 [Caenorhabditis elegans] 1.0E-165
blast CAB00066 Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] emb|CAA22057.1| Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] ref|NP_492707.1| Y106G6G.1 [Caenorhabditis elegans] 1.0E-154
blast CAB00058 Hypothetical protein ZC434.2 [Caenorhabditis elegans] ref|NP_492708.1| Ribosomal Protein, Small subunit family member (rps-7) [Caenorhabditis elegans] sp|Q23312|RS7_CAEEL 40S ribosomal protein S7 emb|CAE73793.1| Hypothetical protein CBG21343 [Caenorhabditis briggsae] 1.0E-105
blast CAE73792 Hypothetical protein CBG21342 [Caenorhabditis briggsae] 2.0E-95
blast CAE73792 Hypothetical protein CBG21342 [Caenorhabditis briggsae] 3.0E-87
blast CAE73792 Hypothetical protein CBG21342 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR000554 EMBL-EBI Ribosomal protein S7E 1.2E-97
Sequence
Target Sequence 
>C. ELEGANS:185709_AT
actggatgagcttcgttttcgtgcggcgctcctgaaagtggcgactacggtggctggaag
aactgaaaacgagaatgatccactctcatcagttttctaccttcccgttcttctcgctgg
aatcatctttcatccggacacatcccaatcatacgcggcaggtcttcttcgtctttgcaa
acggcttctcgttgtttctgaggtggtccaatacgagaagaatccaaaaaagaatgatcc
aattgtcaccatgagcaacattctaatccatccagcacaatcctctgtgcaaagcttcta
cgttcctgaacaaatttgtgctgatggaaacggagaagtctgtgctccagaggaaaaact
cgtccttccaatcgcacgtgacagtgttcacttaatgacctcaaatgtaaacggcgaagt
tactgctccagaagagaagattgatccagttgctcgtgacagctcccacgctctccccga
gaacggagaagtcacaggaaattcggagatttctatgccaattgctaaggacagtgccac
aacattgatttctaaagagctgccacaaccgatgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGATGAGCTTCGTTTTCGTGCG 211 97 510 Antisense
GGCGCTCCTGAAAGTGGCGACTACG 200 541 534 Antisense
TGATCCACTCTCATCAGTTTTCTAC 573 565 585 Antisense
GCTGGAATCATCTTTCATCCGGACA 82 295 625 Antisense
GTCTTCTTCGTCTTTGCAAACGGCT 311 469 671 Antisense
GCAAACGGCTTCTCGTTGTTTCTGA 112 317 686 Antisense
CAACATTCTAATCCATCCAGCACAA 436 189 765 Antisense
AATCCTCTGTGCAAAGCTTCTACGT 26 167 788 Antisense
AAACGGCGAAGTTACTGCTCCAGAA 446 125 918 Antisense
GATTGATCCAGTTGCTCGTGACAGC 321 435 948 Antisense
TAAAGAGCTGCCACAACCGATGTCA 352 641 1062 Antisense
Sequence Source Affymetrix Proprietary Database