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[185707_at]

Description F21C10.5 /REP_DB=WormBase Gene ID /WP=CE07120 /TR=Q19665 /GB=AAA97975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 43.4
(-1.3)
A 		24.5
(-3)
P 		38.4
(-1.8)
M 		92.8
(3)
A 		68
B 50.5
(3)
A 		40.9
(-0)
A 		36.1
(-1.5)
A 		31.4
(-3)
A 		19
C 61.7
(3)
A 		31.6
(-1.8)
A 		47.2
(0.7)
A 		24.4
(-3)
A 		37
avr 51.9
(3) 		32.3
(-3) 		40.6
(-0.5) 		49.5
(2.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 47
(1)
A 		40.8
(0.2)
P 		15.8
(-3)
A 		28.4
(-1.4)
A 		20.2
(-2.4)
A 		62.5
(3)
P 		47
B 30
(-1.9)
A 		43.1
(-0.1)
A 		56.1
(1.7)
A 		36.8
(-1)
A 		22.3
(-3)
P 		65.3
(3)
P 		43
C 36.7
(-2.1)
A 		53.3
(1.8)
P 		42
(-0.9)
A 		45.1
(-0.1)
M 		32.8
(-3)
A 		58.6
(3)
M 		26
avr 37.9
(-0.9) 		45.7
(0.3) 		38
(-0.9) 		36.8
(-1.1) 		25.1
(-3) 		62.1
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.8
(3)
A 		5.3
(-3)
P 		10
(-0.3)
M 		13.6
(1.7)
A 		11
B 16.1
(3)
A 		10.1
(-0.8)
A 		8.4
(-1.9)
A 		6.7
(-3)
A 		9
C 20.4
(3)
A 		9.1
(-1.2)
A 		16.4
(1.5)
A 		4.1
(-3)
A 		16
avr 17.4
(3) 		8.2
(-2.9) 		11.6
(-0.7) 		8.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.7
(-0.3)
A 		14.5
(2.6)
P 		3.4
(-3)
A 		7.2
(-1.1)
A 		6.1
(-1.6)
A 		15.2
(3)
P 		12
B 10.4
(-2.5)
A 		14.4
(-0.9)
A 		13.6
(-1.2)
A 		9.7
(-2.8)
A 		9.1
(-3)
P 		24.4
(3)
P 		15
C 13.6
(-0.4)
A 		16.3
(1.1)
P 		10.7
(-2.1)
A 		9.1
(-3)
M 		10.6
(-2.1)
A 		19.6
(3)
M 		11
avr 10.9
(-1.8) 		15.1
(0.5) 		9.2
(-2.7) 		8.7
(-2.9) 		8.6
(-3) 		19.7
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12156
Sequence Type Exemplar sequence
Representative Public ID F21C10.5 NCBI
Target Description F21C10.5 /REP_DB=WormBase Gene ID /WP=CE07120 /TR=Q19665 /GB=AAA97975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072964 NCBI Caenorhabditis elegans F21C10.5 (F21C10.5) mRNA, complete cds. 11/11 None
SNAP00000042381 ENSEMBL cdna:SNAP chromosome:CEL140:V:9128231:9130080:1 11/11 None
GENEFINDER00000042386 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9126078:9130983:1 11/11 None
F21C10.5 ENSEMBL cdna:known chromosome:CEL140:V:9128231:9128592:1 gene:F21C10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9128231-9128593(+) 77.56 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.5
Entrez Gene 184765 Entrez gene
SwissProt Q19665 EMBL-EBI
WormBase CE07120 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97976 Hypothetical protein F21C10.4 [Caenorhabditis elegans] ref|NP_505366.1| F21C10.4 [Caenorhabditis elegans] 8.0E-67
blast AAA97976 Hypothetical protein F21C10.4 [Caenorhabditis elegans] ref|NP_505366.1| F21C10.4 [Caenorhabditis elegans] 7.0E-62
blast AAA97974 Hypothetical protein F21C10.6 [Caenorhabditis elegans] ref|NP_505364.1| F21C10.6 [Caenorhabditis elegans] 1.0E-50
blast CAE72108 Hypothetical protein CBG19200 [Caenorhabditis briggsae] 5.0E-46
blast CAE72107 Hypothetical protein CBG19199 [Caenorhabditis briggsae] 5.0E-45
blast CAE72108 Hypothetical protein CBG19200 [Caenorhabditis briggsae] 2.0E-43
blast AAA97975 Hypothetical protein F21C10.5 [Caenorhabditis elegans] ref|NP_505365.1| F21C10.5 [Caenorhabditis elegans] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.5E-38
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 1.1E-29
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.5E-38
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 1.3E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042386 3 380-402,415-434,501-520
Sequence
Target Sequence 
>C. ELEGANS:185707_AT
gaggcggagggggtgcaagaggaggtggaagaggtttcagaggaggtggaggtggaaagt
ttggtcacgctggaagaattcattacggatcatcttcgttccgtgaaaacgtttttctta
atccaacatcttcaaaaacatactttacaccgggaccagcatccaatacttacatcatca
accaaccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCGGAGGGGGTGCAAGAGGAGG 691 403 89 Antisense
AGAGGTTTCAGAGGAGGTGGAGGTG 699 57 118 Antisense
AGGTGGAAAGTTTGGTCACGCTGGA 596 57 138 Antisense
GTTTGGTCACGCTGGAAGAATTCAT 70 451 147 Antisense
AGAATTCATTACGGATCATCTTCGT 653 75 163 Antisense
ATCATCTTCGTTCCGTGAAAACGTT 553 29 177 Antisense
CGTTTTTCTTAATCCAACATCTTCA 325 245 198 Antisense
ATCCAACATCTTCAAAAACATACTT 220 39 209 Antisense
ACATACTTTACACCGGGACCAGCAT 30 103 226 Antisense
GGACCAGCATCCAATACTTACATCA 467 523 241 Antisense
ATACTTACATCATCAACCAACCATC 695 23 254 Antisense
Sequence Source Affymetrix Proprietary Database