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[185706_at]

Description Y43F8B.10 /REP_DB=WormBase Gene ID /WP=CE21894 /TR=Q9XWY0 /GB=CAA21506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1
(-3)
A 		1.7
(-2)
A 		1.8
(-1.8)
A 		5
(3)
A 		4
B 1.5
(-3)
A 		2.5
(-2.5)
A 		1.6
(-2.9)
A 		12.8
(3)
A 		11
C 8
(3)
A 		2.5
(-2.6)
A 		2.1
(-3)
A 		4
(-1.1)
A 		6
avr 3.5
(-1.1) 		2.2
(-2.6) 		1.8
(-3) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.7
(-2.3)
A 		2.5
(-1.4)
A 		1.1
(-3)
A 		3.1
(-0.8)
A 		3
(-0.9)
A 		6.5
(3)
A 		5
B 1.7
(-1.4)
A 		2.1
(-0.6)
A 		3.9
(3)
A 		0.9
(-3)
A 		1
(-2.8)
A 		1
(-2.8)
A 		3
C 1
(-3)
A 		3
(-1)
A 		2.4
(-1.6)
A 		7
(3)
A 		3.1
(-0.9)
A 		2.6
(-1.4)
A 		6
avr 1.5
(-3) 		2.5
(-0.3) 		2.5
(-0.3) 		3.7
(3) 		2.4
(-0.5) 		3.4
(2.2) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-1)
A 		0.7
(3)
A 		0
B 0.5
(-2.7)
A 		0.6
(-2.5)
A 		0.4
(-3)
A 		2.7
(3)
A 		2
C 2.6
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2
avr 1.2
(1.7) 		0.6
(-2.3) 		0.5
(-3) 		1.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.3
(-2.6)
A 		0.9
(-0)
A 		0.2
(-3)
A 		0.8
(-0.4)
A 		0.9
(-0)
A 		1.6
(3)
A 		1
B 0.6
(-0)
A 		0.7
(0.8)
A 		1
(3)
A 		0.2
(-3)
A 		0.4
(-1.5)
A 		0.4
(-1.5)
A 		1
C 0.4
(-3)
A 		0.9
(0)
A 		0.6
(-1.8)
A 		1.4
(3)
A 		1
(0.6)
A 		0.9
(0)
A 		1
avr 0.4
(-3) 		0.8
(1) 		0.6
(-1) 		0.8
(1) 		0.8
(1) 		1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12976
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.10 NCBI
Target Description Y43F8B.10 /REP_DB=WormBase Gene ID /WP=CE21894 /TR=Q9XWY0 /GB=CAA21506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075388(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075388 NCBI Caenorhabditis elegans Y43F8B.10 (Y43F8B.10) mRNA, complete cds. 10/11 None
SNAP00000027172 ENSEMBL cdna:SNAP chromosome:CEL140:V:19470956:19479515:1 10/11 None
GENEFINDER00000027200 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19477039:19477437:1 11/11 None
Y43F8B.10 ENSEMBL cdna:known chromosome:CEL140:V:19477039:19479515:1 gene:Y43F8B.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19477038-19477437(+) 86.72 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.10
Entrez Gene 189873 Entrez gene
SwissProt Q9XWY0 EMBL-EBI
WormBase CE32751 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21506 Hypothetical protein Y43F8B.10 [Caenorhabditis elegans] ref|NP_507789.2| Y43F8B.10 [Caenorhabditis elegans] 1.0E-177
blast CAA21506 Hypothetical protein Y43F8B.10 [Caenorhabditis elegans] ref|NP_507789.2| Y43F8B.10 [Caenorhabditis elegans] 1.0E-109
blast CAA21517 Hypothetical protein Y43F8B.12 [Caenorhabditis elegans] ref|NP_507787.1| Y43F8B.12 [Caenorhabditis elegans] 1.0E-75
blast CAA21506 Hypothetical protein Y43F8B.10 [Caenorhabditis elegans] ref|NP_507789.2| Y43F8B.10 [Caenorhabditis elegans] 1.0E-60
blast CAA21505 Hypothetical protein Y43F8B.11 [Caenorhabditis elegans] ref|NP_507788.1| Y43F8B.11 [Caenorhabditis elegans] 2.0E-55
blast CAE60774 Hypothetical protein CBG04463 [Caenorhabditis briggsae] 4.0E-32
blast CAE60774 Hypothetical protein CBG04463 [Caenorhabditis briggsae] 4.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507789.2 1 38-60
Y43F8B.10 1 38-60
SNAP00000027172 1 313-335
GENEFINDER00000027200 1 38-60
Sequence
Target Sequence 
>C. ELEGANS:185706_AT
ctcgcccaaaacaaaagttgctccaagctccgcccattttggatccagaccccgcccctt
ttgctccaaactcctcagaaactcgaaccggaaaatatttcatatacgctttcataattt
tatcaatatttattaatggagcatcaaattatgcgtggttttccacgttttacgagtgct
caaaagccgaggaaattgtgcaaaggatgtgtgctccgaagttggaacggctggaattat
tgattgaaagtacggtaccggagtttgctatgacaccaattggacgggatatggcccgga
aatgtgcagaagtggaggtttgtaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCCCAAAACAAAAGTTGCTCCA 420 231 29 Antisense
CAAACTCCTCAGAAACTCGAACCGG 441 191 95 Antisense
AATATTTCATATACGCTTTCATAAT 334 173 122 Antisense
CATCAAATTATGCGTGGTTTTCCAC 225 211 170 Antisense
GTTTTCCACGTTTTACGAGTGCTCA 570 447 186 Antisense
TTGTGCAAAGGATGTGTGCTCCGAA 395 709 224 Antisense
GTGCTCCGAAGTTGGAACGGCTGGA 284 477 239 Antisense
GTACGGTACCGGAGTTTGCTATGAC 170 459 278 Antisense
GTTTGCTATGACACCAATTGGACGG 350 451 291 Antisense
GGGATATGGCCCGGAAATGTGCAGA 683 495 314 Antisense
GTGCAGAAGTGGAGGTTTGTAAGGC 510 461 332 Antisense
Sequence Source Affymetrix Proprietary Database