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[185705_at]

Description Y62E10A.2 /REP_DB=WormBase Gene ID /WP=CE22695 /TR=Q9U1X8 /GB=CAB60596.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 66      6grp_total > 61      4grp_total > 42      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 730
1 2 3 4 range
A 1021
(-3)
P 		1474.1
(3)
P 		1307.1
(0.8)
P 		1182.2
(-0.9)
P 		453
B 854.8
(-3)
P 		1584.7
(3)
P 		1412.6
(1.6)
P 		883.1
(-2.8)
P 		730
C 1149.3
(-2.4)
P 		1189
(-1.9)
P 		1109.8
(-3)
P 		1524.8
(3)
P 		415
avr 1008.4
(-3) 		1415.9
(3) 		1276.5
(0.9) 		1196.7
(-0.2) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1039
1 2 3 4 5 6 range
A 1219.8
(-1.7)
P 		1304.7
(-1.2)
P 		2028
(3)
P 		2006.1
(2.9)
P 		1093.8
(-2.4)
P 		989.4
(-3)
P 		1039
B 1038.6
(-3)
P 		1090.2
(-2.6)
P 		1822.4
(3)
P 		1499.2
(0.5)
P 		1512.1
(0.6)
P 		1399.6
(-0.2)
P 		784
C 1077.8
(-2.7)
P 		1273.5
(-0.1)
P 		1164
(-1.5)
P 		1507.1
(3)
P 		1062.8
(-2.9)
P 		1051.7
(-3)
P 		455
avr 1112.1
(-3) 		1222.8
(-1.8) 		1671.5
(3) 		1670.8
(3) 		1222.9
(-1.8) 		1146.9
(-2.6) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 371.7
(3)
P 		320
(1.4)
P 		341.7
(2.1)
P 		173
(-3)
P 		199
B 272.6
(-0.5)
P 		391.4
(3)
P 		327.3
(1.1)
P 		188.2
(-3)
P 		203
C 380.4
(2.7)
P 		341.9
(0.9)
P 		386.8
(3)
P 		257.1
(-3)
P 		130
avr 341.6
(2.6) 		351.1
(3) 		351.9
(3) 		206.1
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 224.9
(-3)
P 		464
(2.1)
P 		441.7
(1.6)
P 		508.8
(3)
P 		330.1
(-0.8)
P 		240.9
(-2.7)
P 		284
B 361.4
(-3)
P 		362.9
(-3)
P 		442.5
(-1.1)
P 		397.1
(-2.2)
P 		614.3
(3)
P 		521.9
(0.8)
P 		253
C 399.5
(3)
P 		388.6
(2.4)
P 		296.3
(-3)
P 		303.1
(-2.6)
P 		343.9
(-0.2)
P 		352.1
(0.2)
P 		103
avr 328.6
(-3) 		405.2
(1.6) 		393.5
(0.9) 		403
(1.4) 		429.4
(3) 		371.6
(-0.4) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9661
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.2 NCBI
Target Description Y62E10A.2 /REP_DB=WormBase Gene ID /WP=CE22695 /TR=Q9U1X8 /GB=CAB60596.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070171
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008090 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13370350:13371498:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070171 8/11 Cross Hyb Matching Probes None
SNAP00000008073 2/11 Cross Hyb Matching Probes None
Y62E10A.2.2 8/11 Cross Hyb Matching Probes None
Y62E10A.2.1 8/11 Cross Hyb Matching Probes None
Y62E10A.2.3 8/11 Cross Hyb Matching Probes None
Y62E10A.2.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13370355-13371504(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60596 Hypothetical protein Y62E10A.2 [Caenorhabditis elegans] ref|NP_502572.2| Y62E10A.2 [Caenorhabditis elegans] 2.0E-67
blast CAE58615 Hypothetical protein CBG01782 [Caenorhabditis briggsae] 1.0E-36
blast XP_789231 PREDICTED: similar to RPP20 protein [Strongylocentrotus purpuratus] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:185705_AT
acccactcgtcgcgaaatgtcgtgtccctttaaacagccaacatttgcaatgcattgaaa
ttgcagattttatattattttcgagcaaaggcaccttgtttggttgcagaaacagcaaaa
ctgtctcctcggcgttttctggaagtgtgctcgaatcggtgaacgtctcagtccgtgggt
atcgatcagttgcttttgcatggcatttgttgtgctgttcctttaaaataatggctatcc
gcatgactccatcatcgaaacgattcgatgaaaaaacaaacgaaatgaggcgccgtccgc
ctgtaaaaccaagcagtaatcctaatcatatttatatcacaagaaaaaccaacgtcgaat
cacaatcaaaatccaccgaggagatgttgaataacgcattcgatgaagttttcatccatg
gaatgggagcatctatcaataaagctctagtttttgcgatggaagttgagagaagattcg
gtggaagtgtcaagtctgatattcaaacgtctactgtacaatgtacagatgatattgtat
cacttctggaccttgatcaaagcgagacacgtcatcgttctgtttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCACTCGTCGCGAAATGTCGTGT 422 89 170 Antisense
TGTCGTGTCCCTTTAAACAGCCAAC 685 555 187 Antisense
GAAACAGCAAAACTGTCTCCTCGGC 598 355 278 Antisense
TCTCCTCGGCGTTTTCTGGAAGTGT 6 609 293 Antisense
GTGCTCGAATCGGTGAACGTCTCAG 5 481 316 Antisense
AACGTCTCAGTCCGTGGGTATCGAT 182 145 331 Antisense
GGGTATCGATCAGTTGCTTTTGCAT 307 497 346 Antisense
GCATTTGTTGTGCTGTTCCTTTAAA 541 307 372 Antisense
TATCCGCATGACTCCATCATCGAAA 24 659 405 Antisense
GATATTGTATCACTTCTGGACCTTG 512 427 700 Antisense
GAGACACGTCATCGTTCTGTTTCTG 453 393 733 Antisense
Sequence Source Affymetrix Proprietary Database