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[185704_at]

Description C36C5.13 /REP_DB=WormBase Gene ID /WP=CE08602 /TR=O16407 /GB=AAB65935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 4.4
(-3)
A 		8.5
(-2.5)
A 		27.2
(0)
A 		49.7
(3)
A 		45
B 33.8
(0.4)
A 		14.8
(-1.6)
A 		57.7
(3)
A 		2.2
(-3)
A 		56
C 8.4
(-2.5)
A 		18.9
(-0.8)
A 		5
(-3)
A 		43.3
(3)
A 		38
avr 15.5
(-2.5) 		14.1
(-3) 		30
(2.4) 		31.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 9.5
(-2.6)
A 		32.4
(-0.2)
A 		63.5
(3)
A 		8.9
(-2.7)
A 		5.8
(-3)
A 		10.3
(-2.5)
A 		58
B 13.3
(-1.6)
A 		5.3
(-3)
A 		14.1
(-1.5)
A 		9.4
(-2.3)
A 		6.2
(-2.8)
A 		40.5
(3)
A 		35
C 23.1
(3)
A 		15.2
(0.1)
A 		7
(-3)
A 		21.5
(2.4)
A 		13.9
(-0.4)
A 		9.9
(-1.9)
A 		16
avr 15.3
(-0.9) 		17.6
(-0.2) 		28.2
(3) 		13.3
(-1.6) 		8.6
(-3) 		20.2
(0.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.6
(-3)
A 		1.8
(-2.8)
A 		7.1
(2.8)
A 		7.3
(3)
A 		6
B 10.8
(1.8)
A 		3.7
(-1.5)
A 		13.4
(3)
A 		0.5
(-3)
A 		13
C 2.8
(-1.8)
A 		5.4
(1)
A 		1.7
(-3)
A 		7.3
(3)
A 		6
avr 5.1
(-0.6) 		3.6
(-3) 		7.4
(3) 		5
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.8
(-3)
A 		11.5
(1.9)
A 		13.8
(3)
A 		2.3
(-2.7)
A 		1.7
(-3)
A 		2.5
(-2.6)
A 		12
B 4.6
(-1.7)
A 		1.8
(-3)
A 		3.4
(-2.3)
A 		2.5
(-2.7)
A 		2.5
(-2.7)
A 		15.1
(3)
A 		13
C 8.6
(3)
A 		4.6
(-0.5)
A 		1.8
(-3)
A 		4.3
(-0.8)
A 		4.5
(-0.6)
A 		3.3
(-1.7)
A 		7
avr 5
(0.1) 		6
(1.5) 		6.3
(2) 		3
(-2.9) 		2.9
(-3) 		7
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14908
Sequence Type Exemplar sequence
Representative Public ID C36C5.13 NCBI
Target Description C36C5.13 /REP_DB=WormBase Gene ID /WP=CE08602 /TR=O16407 /GB=AAB65935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071469 NCBI Caenorhabditis elegans C36C5.13 (C36C5.13) mRNA, complete cds. 11/11 None
SNAP00000036659 ENSEMBL cdna:SNAP chromosome:CEL140:V:3161574:3162485:-1 11/11 None
GENEFINDER00000036668 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3161574:3162485:-1 11/11 None
C36C5.13 ENSEMBL cdna:known chromosome:CEL140:V:3161574:3162485:-1 gene:C36C5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3161573-3162485(-) 89.14 100.0
Public Domain and Genome References
Ensembl C36C5.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503870 C36C5.13 [Caenorhabditis elegans] gb|AAB65935.1| Hypothetical protein C36C5.13 [Caenorhabditis elegans] 1.0E-179
blast AAK39265 Hypothetical protein R11E3.3 [Caenorhabditis elegans] ref|NP_500640.1| R11E3.3 [Caenorhabditis elegans] 3.0E-39
blast T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:185704_AT
tgtctcaatcaccggctctgaaaaatctactacacatcaaattgccaccaagccagcacg
ggttcaaaaagctgcattccacgacgacagcgatcactgaaaccttgaactttatcactg
gcggactaaatggcaagagacctgccgaacggtcaatcctgataagtctcgatctgaagg
ccgctttcgacacagtctgccacgataagcttttcgtagaactggctcaaacaaaagctg
agccgaaattgatccgttggattacaggctatatacacaaaagacgcataaggacactgt
acgacggtcgctggtccagatggaaaactctccgaggcggtgtgcctcaaggagcggtat
ctagcccttccctcttctcattctatacgataaacactccatccggaaatgggacagaaa
tcatccagtatgcggacgacacgtccattctcgttcgggacaagtcaatcaataacgcgg
cagtaacggcccaagcccatctgaatgtatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTCAATCACCGGCTCTGAAAAA 12 559 305 Antisense
AGAGACCTGCCGAACGGTCAATCCT 553 69 440 Antisense
ATAAGTCTCGATCTGAAGGCCGCTT 705 25 466 Antisense
GACACAGTCTGCCACGATAAGCTTT 261 367 493 Antisense
GACACTGTACGACGGTCGCTGGTCC 183 367 597 Antisense
GGAAAACTCTCCGAGGCGGTGTGCC 169 529 626 Antisense
TCAAGGAGCGGTATCTAGCCCTTCC 153 631 651 Antisense
TCCCTCTTCTCATTCTATACGATAA 696 597 673 Antisense
CACGTCCATTCTCGTTCGGGACAAG 396 197 744 Antisense
ATAACGCGGCAGTAACGGCCCAAGC 511 23 776 Antisense
GGCCCAAGCCCATCTGAATGTATTA 472 541 792 Antisense
Sequence Source Affymetrix Proprietary Database