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[185703_at]

Description H23L24.2 /REP_DB=WormBase Gene ID /WP=CE23817 /TR=Q9N5L3 /GB=AAF39894.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 38.3
(-1.8)
A 		62.6
(1.6)
P 		30
(-3)
A 		72.8
(3)
A 		43
B 62.8
(3)
P 		16.9
(-3)
A 		31.2
(-1.1)
A 		31.4
(-1.1)
A 		46
C 55.8
(0.1)
A 		31.1
(-2.4)
A 		25.7
(-3)
A 		84.4
(3)
M 		59
avr 52.3
(1.1) 		36.9
(-1.6) 		29
(-3) 		62.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 18.5
(-3)
A 		32.6
(-1.2)
A 		46.1
(0.6)
A 		26.6
(-2)
A 		32.1
(-1.2)
A 		65.1
(3)
A 		47
B 25.5
(-3)
A 		33.7
(-1.7)
A 		32.7
(-1.9)
A 		40.3
(-0.7)
A 		64
(3)
P 		37.6
(-1.1)
A 		39
C 34.3
(-0.8)
A 		54.9
(0.7)
P 		3.7
(-3)
A 		71.5
(1.9)
A 		9.1
(-2.6)
A 		86.5
(3)
A 		83
avr 26.1
(-3) 		40.4
(-0.7) 		27.5
(-2.8) 		46.1
(0.2) 		35.1
(-1.5) 		63.1
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14
(3)
A 		13.6
(2.6)
P 		7.8
(-3)
A 		10.7
(-0.2)
A 		6
B 20
(3)
P 		4.2
(-3)
A 		7.2
(-1.9)
A 		6.7
(-2.1)
A 		16
C 18.5
(3)
A 		8.9
(-3)
A 		9
(-2.9)
A 		14.2
(0.3)
M 		10
avr 17.5
(3) 		8.9
(-2.4) 		8
(-3) 		10.5
(-1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.4
(-3)
A 		11.6
(1)
A 		10
(0.2)
A 		6.7
(-1.4)
A 		9.7
(0)
A 		15.8
(3)
A 		12
B 8.9
(-2.7)
A 		11.2
(-1.9)
A 		7.9
(-3)
A 		10.7
(-2.1)
A 		26
(3)
P 		14
(-1)
A 		18
C 12.7
(-0.5)
A 		16.7
(0.4)
P 		0.9
(-3)
A 		14.4
(-0.1)
A 		2.9
(-2.6)
A 		29
(3)
A 		28
avr 8.3
(-2.1) 		13.2
(0.1) 		6.3
(-3) 		10.6
(-1.1) 		12.9
(-0) 		19.6
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8951
Sequence Type Exemplar sequence
Representative Public ID H23L24.2 NCBI
Target Description H23L24.2 /REP_DB=WormBase Gene ID /WP=CE23817 /TR=Q9N5L3 /GB=AAF39894.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069096 NCBI Caenorhabditis elegans H23L24.2 (H23L24.2) mRNA, complete cds. 11/11 None
SNAP00000025375 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8715605:8717839:1 11/11 None
GENEFINDER00000025379 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8715633:8717839:1 11/11 None
H23L24.2 ENSEMBL cdna:known chromosome:CEL140:IV:8715633:8717839:1 gene:H23L24.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8715638-8717845(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H23L24.2
Entrez Gene 186763 Entrez gene
SwissProt Q9N5L3 EMBL-EBI
WormBase CE23817 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39894 Hypothetical protein H23L24.2 [Caenorhabditis elegans] ref|NP_501497.1| H23L24.2 [Caenorhabditis elegans] 0.0
blast CAE56879 Hypothetical protein CBG24717 [Caenorhabditis briggsae] 0.0
blast AAK21368 Hypothetical protein D1037.5 [Caenorhabditis elegans] ref|NP_491201.1| D1037.5 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 7.4E-25
Pfam IPR002641 EMBL-EBI Patatin 7.4E-25
Sequence
Target Sequence 
>C. ELEGANS:185703_AT
caattcgatgcactacagctgctcctacttactttccatcgttcaatggcatggcggacg
gagcccttttctgcaacaatccatgtattatggtgatgaccgaattcgcaaagctaaaga
aaattgaaaactatcgtggtaaaaacaacactgacgagattggatgtgtgatttccgttg
gaaccggaattgagccatcgtatccaattaatggaattgacatcaatttaacaagtgggc
tgactggaataactggaaattggagagagataattgaaaatacaaaaaatctgataactg
tcttcctttatcagtgcacaagttcccacaacgtccatgtcggtcaatctcgtgaatggt
gtcactcgatgcaagttccattcttccgcttctcgcctcatctcgctgctccattcgaac
ttgataattgcaaaattgaagacattacgaatgcaatgttcgacaatgaagtatacattc
gtacagaaatcaaacaacacatatctgatttgtgcagacttttgaaatcgatgccacgta
acacggagccatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCGATGCACTACAGCTGCTCC 26 181 899 Antisense
CCTACTTACTTTCCATCGTTCAATG 669 267 922 Antisense
CAATGGCATGGCGGACGGAGCCCTT 219 183 942 Antisense
CCCTTTTCTGCAACAATCCATGTAT 642 259 962 Antisense
GGAACCGGAATTGAGCCATCGTATC 648 529 1078 Antisense
AACTGTCTTCCTTTATCAGTGCACA 363 143 1194 Antisense
ATCAGTGCACAAGTTCCCACAACGT 248 29 1208 Antisense
GTCCATGTCGGTCAATCTCGTGAAT 115 477 1231 Antisense
GAATGGTGTCACTCGATGCAAGTTC 323 333 1252 Antisense
TCGCTGCTCCATTCGAACTTGATAA 441 599 1301 Antisense
GATGCCACGTAACACGGAGCCATGT 389 415 1428 Antisense
Sequence Source Affymetrix Proprietary Database