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[185702_at]

Description H10D18.1 /REP_DB=WormBase Gene ID /WP=CE20956 /TR=Q9N5N1 /GB=AAF39873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 80.4
(3)
A 		20.9
(-1.8)
A 		5.3
(-3)
A 		13.1
(-2.4)
A 		75
B 87.1
(3)
A 		11.7
(-2.5)
A 		5.5
(-3)
A 		54.4
(0.6)
A 		82
C 94.8
(3)
A 		15.2
(-2.3)
A 		5.3
(-3)
A 		35.4
(-1)
A 		90
avr 87.4
(3) 		15.9
(-2.2) 		5.4
(-3) 		34.3
(-0.9) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 17.7
(-0.6)
A 		14.4
(-1.2)
A 		37.5
(3)
A 		19.8
(-0.2)
A 		12.7
(-1.5)
A 		4.6
(-3)
A 		33
B 55
(3)
A 		29.5
(-0.1)
A 		7.4
(-2.8)
A 		21.3
(-1.1)
A 		5.9
(-3)
A 		22.9
(-0.9)
A 		49
C 56.1
(3)
A 		11.7
(-2.3)
A 		12
(-2.3)
A 		10.6
(-2.4)
A 		16.3
(-1.7)
A 		5.7
(-3)
A 		50
avr 42.9
(3) 		18.5
(-1.6) 		19
(-1.5) 		17.2
(-1.8) 		11.6
(-2.9) 		11.1
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 29.3
(3)
A 		4.5
(-2.3)
A 		1.4
(-3)
A 		1.9
(-2.9)
A 		28
B 27.8
(3)
A 		2.9
(-2.6)
A 		1.3
(-3)
A 		11.6
(-0.7)
A 		27
C 31.4
(3)
A 		4.4
(-2.5)
A 		1.9
(-3)
A 		6
(-2.2)
A 		30
avr 29.5
(3) 		3.9
(-2.5) 		1.5
(-3) 		6.5
(-1.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.3
(-1.1)
A 		5.1
(0.4)
A 		8.2
(3)
A 		5
(0.3)
A 		3.8
(-0.7)
A 		1.1
(-3)
A 		7
B 19.1
(3)
A 		9.8
(-0.2)
A 		1.8
(-3)
A 		5.6
(-1.7)
A 		2.4
(-2.8)
A 		8.6
(-0.6)
A 		17
C 20.8
(3)
A 		3.6
(-2.5)
A 		3
(-2.7)
A 		2.1
(-2.9)
A 		5.3
(-1.9)
A 		1.9
(-3)
A 		19
avr 14.4
(3) 		6.2
(-1.6) 		4.3
(-2.7) 		4.2
(-2.8) 		3.8
(-3) 		3.9
(-2.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15430
Sequence Type Exemplar sequence
Representative Public ID H10D18.1 NCBI
Target Description H10D18.1 /REP_DB=WormBase Gene ID /WP=CE20956 /TR=Q9N5N1 /GB=AAF39873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071657 NCBI Caenorhabditis elegans H10D18.1 (H10D18.1) mRNA, complete cds. 11/11 None
SNAP00000043936 ENSEMBL cdna:SNAP chromosome:CEL140:V:3815100:3818149:1 11/11 None
GENEFINDER00000043944 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3815100:3816346:1 11/11 None
H10D18.1 ENSEMBL cdna:known chromosome:CEL140:V:3815112:3816356:1 gene:H10D18.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3815111-3816356(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H10D18.1
Entrez Gene 186713 Entrez gene
SwissProt Q9N5N1 EMBL-EBI
WormBase CE20956 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39873 Hypothetical protein H10D18.1 [Caenorhabditis elegans] ref|NP_504058.1| H10D18.1 [Caenorhabditis elegans] 2.0E-93
blast AAF39873 Hypothetical protein H10D18.1 [Caenorhabditis elegans] ref|NP_504058.1| H10D18.1 [Caenorhabditis elegans] 4.0E-93
blast AAF39873 Hypothetical protein H10D18.1 [Caenorhabditis elegans] ref|NP_504058.1| H10D18.1 [Caenorhabditis elegans] 1.0E-76
blast CAE58116 Hypothetical protein CBG01203 [Caenorhabditis briggsae] 6.0E-29
blast CAE58116 Hypothetical protein CBG01203 [Caenorhabditis briggsae] 2.0E-28
blast CAE58116 Hypothetical protein CBG01203 [Caenorhabditis briggsae] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:185702_AT
aagcctatcggcaagtgatgtcggcgaaatcaccgtcggacgctgctttgacatggaacc
tattcgatctcccgaacaacatggaactagcccgcttcttttccaccttgtcaaaagaag
aaatggcaaaattcgagcagtgtgtgtttgtggatggacaggaccccaaaacttatataa
aaatgcacaaaatggttgaatccaccgcaacaattgccttgagcgaggaaatcgaaaata
agaggacaattttggtagctgagccaaatcgcggcggggtttcaggtcatgagggggaga
tggcatcgacttcaagtggattccgagacggctaccacccatgcatggatcacaccagtt
acgctgagggtctgttcaccgagtccgaaaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTATCGGCAAGTGATGTCGGC 150 147 41 Antisense
GATGTCGGCGAAATCACCGTCGGAC 266 409 57 Antisense
TCGGACGCTGCTTTGACATGGAACC 29 607 76 Antisense
ACATGGAACCTATTCGATCTCCCGA 387 107 91 Antisense
GAACAACATGGAACTAGCCCGCTTC 41 353 114 Antisense
GAATCCACCGCAACAATTGCCTTGA 693 329 238 Antisense
GCCAAATCGCGGCGGGGTTTCAGGT 320 279 303 Antisense
GGAGATGGCATCGACTTCAAGTGGA 70 519 336 Antisense
AGTGGATTCCGAGACGGCTACCACC 488 57 355 Antisense
GGATCACACCAGTTACGCTGAGGGT 137 511 387 Antisense
GTCTGTTCACCGAGTCCGAAAAAGC 336 467 410 Antisense
Sequence Source Affymetrix Proprietary Database