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[185701_at]

Description Y32B12A.5 /REP_DB=WormBase Gene ID /WP=CE20202 /TR=Q9N6E3 /GB=CAB76747.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 13.6
(3)
A 		9.7
(1)
A 		1.7
(-3)
A 		4.7
(-1.5)
A 		12
B 4.7
(-2.6)
A 		4.2
(-2.7)
A 		3.1
(-3)
A 		27.7
(3)
A 		25
C 3.2
(-2.9)
A 		6.6
(-2.6)
A 		1.8
(-3)
A 		73.2
(3)
A 		71
avr 7.2
(-2.1) 		6.8
(-2.2) 		2.2
(-3) 		35.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 39.6
(3)
A 		18.6
(-0.5)
A 		12.9
(-1.5)
A 		4.9
(-2.8)
A 		4.9
(-2.8)
A 		3.7
(-3)
A 		36
B 20.3
(-0.6)
A 		3.7
(-3)
A 		6.7
(-2.6)
A 		44.5
(3)
A 		4.9
(-2.8)
A 		4.6
(-2.9)
A 		41
C 2.2
(-3)
A 		10.6
(-1.4)
A 		7.9
(-1.9)
A 		5.5
(-2.4)
A 		33.6
(3)
A 		14.3
(-0.7)
A 		31
avr 20.7
(3) 		11
(-1.4) 		9.2
(-2.2) 		18.3
(1.9) 		14.5
(0.2) 		7.5
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.9
(3)
A 		2.1
(-0.8)
A 		0.5
(-3)
A 		0.7
(-2.7)
A 		4
B 1.5
(-2.1)
A 		1
(-2.7)
A 		0.7
(-3)
A 		5.9
(3)
A 		5
C 1.1
(-2.7)
A 		1.9
(-2.3)
A 		0.6
(-3)
A 		12.3
(3)
A 		12
avr 2.5
(-1) 		1.7
(-1.8) 		0.6
(-3) 		6.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.3
(3)
A 		6.6
(2.3)
A 		2.8
(-1.2)
A 		1.2
(-2.7)
A 		1.5
(-2.4)
A 		0.9
(-3)
A 		6
B 7.1
(0.3)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		11.8
(3)
A 		2
(-2.5)
A 		1.7
(-2.7)
A 		11
C 0.8
(-3)
A 		3.2
(-1.6)
A 		2
(-2.3)
A 		1.1
(-2.8)
A 		10.9
(3)
A 		4.8
(-0.6)
A 		10
avr 5.1
(3) 		3.7
(0.2) 		2.1
(-3) 		4.7
(2.2) 		4.8
(2.4) 		2.5
(-2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14599
Sequence Type Exemplar sequence
Representative Public ID Y32B12A.5 NCBI
Target Description Y32B12A.5 /REP_DB=WormBase Gene ID /WP=CE20202 /TR=Q9N6E3 /GB=CAB76747.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074771 NCBI Caenorhabditis elegans Y32B12A.5 (Y32B12A.5) mRNA, complete cds. 11/11 None
SNAP00000002057 ENSEMBL cdna:SNAP chromosome:CEL140:V:16489871:16490156:-1 11/11 None
GENEFINDER00000002060 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16489839:16490156:-1 11/11 None
Y32B12A.5 ENSEMBL cdna:known chromosome:CEL140:V:16489556:16490156:-1 gene:Y32B12A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16489555-16490156(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32B12A.5
Entrez Gene 189565 Entrez gene
SwissProt Q9N6E3 EMBL-EBI
WormBase CE20202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76716 Hypothetical protein Y32B12A.5 [Caenorhabditis elegans] emb|CAB76747.1| Hypothetical protein Y32B12A.5 [Caenorhabditis elegans] ref|NP_507172.1| Y32B12A.5 [Caenorhabditis elegans] 5.0E-41
blast CAB76716 Hypothetical protein Y32B12A.5 [Caenorhabditis elegans] emb|CAB76747.1| Hypothetical protein Y32B12A.5 [Caenorhabditis elegans] ref|NP_507172.1| Y32B12A.5 [Caenorhabditis elegans] 9.0E-33
Sequence
Target Sequence 
>C. ELEGANS:185701_AT
cagacccacgaagcctcgaagaagagctacagctggtttcagaggaagatcgaaagcaat
ttgagaaccatggatccgatcatgaaactatcaaggcaatgacggcaaggtcggtggctt
gcggtggcctcataagggacgttgtgatggtgtatgttacattcaaaactcaatttctca
agaaaattgaaagaatggagttgggcggaagaactgctctatctgaacttgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACCCACGAAGCCTCGAAGAAGA 66 205 17 Antisense
AAGAGCTACAGCTGGTTTCAGAGGA 79 153 38 Antisense
GCAATTTGAGAACCATGGATCCGAT 157 323 72 Antisense
ATGGATCCGATCATGAAACTATCAA 549 51 86 Antisense
GGCAATGACGGCAAGGTCGGTGGCT 610 533 111 Antisense
CGGCAAGGTCGGTGGCTTGCGGTGG 22 205 119 Antisense
GCGGTGGCCTCATAAGGGACGTTGT 650 291 137 Antisense
GGGACGTTGTGATGGTGTATGTTAC 704 493 152 Antisense
TGTTACATTCAAAACTCAATTTCTC 516 561 171 Antisense
GTTGGGCGGAAGAACTGCTCTATCT 435 437 216 Antisense
GAACTGCTCTATCTGAACTTGCTCG 297 349 227 Antisense
Sequence Source Affymetrix Proprietary Database