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[185700_s_at]

Description C14C11.2 /REP_DB=WormBase Gene ID /WP=CE06821 /TR=Q17979 /GB=AAA96107.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 44.6
(-3)
A 		66.7
(2)
A 		64.3
(1.5)
A 		71.1
(3)
A 		27
B 44
(-3)
A 		55.3
(-0.8)
A 		71.7
(2.3)
A 		75.1
(3)
A 		31
C 23.1
(-3)
A 		31
(-2.4)
A 		65.7
(0.1)
A 		104.4
(3)
M 		81
avr 37.2
(-3) 		51
(-1.2) 		67.2
(0.9) 		83.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 29.4
(-3)
A 		49.5
(-2.3)
A 		76.5
(-1.4)
A 		62.6
(-1.9)
A 		203.1
(3)
P 		195.5
(2.7)
P 		174
B 37
(-3)
A 		56.5
(-2.6)
A 		63.4
(-2.5)
A 		90.3
(-1.9)
A 		235
(1.1)
P 		329
(3)
P 		292
C 17
(-3)
A 		105.4
(-1.3)
A 		66.2
(-2)
A 		97
(-1.4)
A 		154.6
(-0.3)
P 		322.7
(3)
P 		306
avr 27.8
(-3) 		70.5
(-2) 		68.7
(-2) 		83.3
(-1.7) 		197.6
(1) 		282.4
(3) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.2
(2.4)
A 		14.5
(0.8)
A 		16.8
(3)
A 		10.4
(-3)
A 		6
B 14
(-2.4)
A 		13.7
(-3)
A 		16.6
(3)
A 		16
(1.8)
A 		3
C 7.6
(-3)
A 		8.9
(-2.5)
A 		22.9
(3)
A 		17.6
(0.9)
M 		15
avr 12.6
(-2.8) 		12.4
(-3) 		18.8
(3) 		14.7
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 5.4
(-3)
A 		17.6
(-1.7)
A 		16.7
(-1.8)
A 		15.9
(-1.9)
A 		61.3
(3)
P 		47.6
(1.5)
P 		56
B 12.9
(-3)
A 		18.8
(-2.7)
A 		15.4
(-2.9)
A 		23.9
(-2.4)
A 		95.5
(1.5)
P 		122.7
(3)
P 		110
C 6.3
(-3)
A 		32.2
(-1.5)
A 		16.8
(-2.4)
A 		19.5
(-2.2)
A 		50
(-0.4)
P 		108
(3)
P 		102
avr 8.2
(-3) 		22.9
(-2) 		16.3
(-2.4) 		19.8
(-2.2) 		68.9
(1.3) 		92.8
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185700_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12166
Sequence Type Exemplar sequence
Representative Public ID C14C11.2 NCBI
Target Description C14C11.2 /REP_DB=WormBase Gene ID /WP=CE06821 /TR=Q17979 /GB=AAA96107.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072045(11), NM_072090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072045 NCBI Caenorhabditis elegans ZC317.7 (ZC317.7) mRNA, complete cds. 11/11 None
NM_072090 NCBI Caenorhabditis elegans C14C11.2 (C14C11.2) mRNA, complete cds. 11/11 None
SNAP00000024123 ENSEMBL cdna:SNAP chromosome:CEL140:V:5663860:5665968:1 11/11 None
GENEFINDER00000024131 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5663860:5665968:1 11/11 None
SNAP00000026643 ENSEMBL cdna:SNAP chromosome:CEL140:V:5468649:5470755:-1 11/11 None
GENEFINDER00000026647 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5468649:5471070:-1 11/11 None
ZC317.7 ENSEMBL cdna:known chromosome:CEL140:V:5468546:5470809:-1 gene:ZC317.7 11/11 None
C14C11.2 ENSEMBL cdna:known chromosome:CEL140:V:5663860:5665968:1 gene:C14C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5663859-5665968(+) 100.0 100.0
chrV:5468648-5470755(-) 98.72 98.72
Public Domain and Genome References
Gene Title

Ensembl ZC317.7
C14C11.2
Entrez Gene 178953 Entrez gene
191143 Entrez gene
SwissProt Q17979 EMBL-EBI
Q23079 EMBL-EBI
WormBase CE06821 Wormbase
CE15179 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04964 Hypothetical protein ZC317.7 [Caenorhabditis elegans] ref|NP_504446.1| ZC317.7 [Caenorhabditis elegans] 0.0
blast AAA96107 Hypothetical protein C14C11.2 [Caenorhabditis elegans] ref|NP_504491.1| C14C11.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185700_S_AT
ctggatatgattctcgtgcaacctggagacttttcattattaatcctgataatgttgaag
ttaatgaatatggatcagaagtcaccatccgtgaatatccatcgatcaacgatcttcgtc
aagctaaacaacgggctgagcttaaagatggagcatttagcgagatcgagaagagtgaat
acggcgaaaaagtgattaggcatgaagcaaagaaactttcaagggaacaaaaaaggcttg
agcgtaagcaaagaaaactgcaatggaagcgacaatttacaactgcatcttcgaaatttc
aatcgacttcggataatccatctgagctgaacgacgcagaaaaagcgttgtctaactcca
gaatgggtgaacgagatgaggccgtctgtcgggatatcatcgccgagttgttggatgcta
tagaagttaatgaatatgatgatgaagatagctgtatgtacagtgatttggaatcaagtt
catctgaagatgatgaagaagatgccggcagtcttatttctgtggcgtattcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGATATGATTCTCGTGCAACCTG 428 239 1115 Antisense
GTGCAACCTGGAGACTTTTCATTAT 286 481 1130 Antisense
CACCATCCGTGAATATCCATCGATC 663 201 1197 Antisense
TTACAACTGCATCTTCGAAATTTCA 598 681 1391 Antisense
GGATAATCCATCTGAGCTGAACGAC 114 511 1425 Antisense
AGCGTTGTCTAACTCCAGAATGGGT 706 81 1458 Antisense
TGAACGAGATGAGGCCGTCTGTCGG 265 573 1482 Antisense
GTCTGTCGGGATATCATCGCCGAGT 698 471 1498 Antisense
TCGCCGAGTTGTTGGATGCTATAGA 642 599 1514 Antisense
GAAGATGCCGGCAGTCTTATTTCTG 669 337 1612 Antisense
GTCTTATTTCTGTGGCGTATTCAAC 120 467 1625 Antisense
Sequence Source Affymetrix Proprietary Database