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[185699_at]

Description T03G11.2 /REP_DB=WormBase Gene ID /WP=CE04870 /TR=Q22124 /GB=AAA82450.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 10      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 11.1
(-3)
A 		30.3
(0.1)
A 		28.6
(-0.2)
A 		48.3
(3)
A 		37
B 31.1
(3)
A 		31.2
(3)
A 		6.6
(-3)
A 		20.6
(0.4)
A 		25
C 19.3
(-2.7)
A 		16.1
(-3)
A 		25.7
(-2.1)
A 		83.7
(3)
A 		68
avr 20.5
(-3) 		25.9
(-1.9) 		20.3
(-3) 		50.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 24.4
(0.3)
A 		12.8
(-3)
A 		33.9
(3)
A 		32.3
(2.5)
A 		31.5
(2.3)
A 		26.3
(0.8)
A 		21
B 17.3
(-2.7)
A 		43.2
(3)
A 		30.1
(0.1)
A 		23.5
(-1.3)
A 		38.9
(2.1)
A 		15.7
(-3)
A 		28
C 16.8
(-1.8)
A 		47.3
(3)
A 		9.3
(-3)
A 		37.5
(1.5)
A 		33.2
(0.8)
A 		34.9
(1)
A 		38
avr 19.5
(-3) 		34.4
(3) 		24.4
(-1) 		31.1
(1.6) 		34.5
(3) 		25.6
(-0.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4
(-3)
A 		6.6
(1.5)
A 		7.5
(3)
A 		7.1
(2.3)
A 		4
B 9.9
(3)
A 		7.7
(1.4)
A 		1.5
(-3)
A 		4.4
(-0.9)
A 		8
C 6.4
(-1.9)
A 		4.6
(-3)
A 		8.9
(-0.3)
A 		14.1
(3)
A 		10
avr 6.8
(-1.1) 		6.3
(-2.3) 		6
(-3) 		8.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.5
(-3)
A 		4.6
(-2.9)
A 		7.4
(0.5)
A 		8.2
(1.4)
A 		9.5
(3)
A 		6.4
(-0.7)
A 		5
B 6
(-2.9)
A 		14.4
(2.2)
A 		7.3
(-2.2)
A 		6.2
(-2.8)
A 		15.8
(3)
A 		5.9
(-3)
A 		10
C 6.2
(-1.1)
A 		14.4
(3)
A 		2.4
(-3)
A 		7.5
(-0.5)
A 		10.7
(1.2)
A 		11.7
(1.7)
A 		12
avr 5.6
(-3) 		11.1
(2.2) 		5.7
(-2.9) 		7.3
(-1.4) 		12
(3) 		8
(-0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17303
Sequence Type Exemplar sequence
Representative Public ID T03G11.2 NCBI
Target Description T03G11.2 /REP_DB=WormBase Gene ID /WP=CE04870 /TR=Q22124 /GB=AAA82450.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076480
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028935 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5183280:5186217:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076480 1/11 Cross Hyb Matching Probes None
SNAP00000028928 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028932 1/11 Cross Hyb Matching Probes None
T03G11.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5180209-5185480(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86277 Hypothetical protein T03G11.9 [Caenorhabditis elegans] 6.0E-67
blast CAE68709 Hypothetical protein CBG14633 [Caenorhabditis briggsae] 9.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028935 3 99-121,126-148,155-177
Sequence
Target Sequence 
>C. ELEGANS:185699_AT
ctcacccactgttccgtaaaaagatacagaaagtatacgtggcgaatgtgattccatcta
catatcggtacatttggctgttaacaattaaatatcaagccgccaattcaacagcaacaa
aaaaggtgctatattttaaaatcctggtgtcggatttgaaaaatgaggcagactctcatc
ggcacacagggaagacccgtttttttctcagcactttcacatcaaaagtgcaattattgg
acacacgaattgtcaaatcaaatcattccagacgttttgtctctctgccggctcatcata
gagtgtcacttttttacacctttcatcttttttttattacaactgggaagagacttgttg
cgtttgattttctcgtacgtgcttgtttctacgtgtcgatttcggcacttgtagtatgtt
tattttctacaatatgcatgtttttcggtgtttacactgtcaacttatggctagatattt
ttctgattgttgcgaatacggttgtggccattctcatgatgtttggtctttattatgaca
aggcttcattacttgtaccatttatagtttctgaagtgagttttctctgcgatttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCACCCACTGTTCCGTAAAAAGAT 122 227 854 Antisense
ATATCAAGCCGCCAATTCAACAGCA 353 19 945 Antisense
TTTTTTTCTCAGCACTTTCACATCA 563 675 1053 Antisense
CATTCCAGACGTTTTGTCTCTCTGC 492 217 1117 Antisense
TCTGCCGGCTCATCATAGAGTGTCA 491 609 1137 Antisense
TGTCACTTTTTTACACCTTTCATCT 484 559 1157 Antisense
GACTTGTTGCGTTTGATTTTCTCGT 250 371 1205 Antisense
GATTTTCTCGTACGTGCTTGTTTCT 156 429 1219 Antisense
TCTACGTGTCGATTTCGGCACTTGT 370 613 1241 Antisense
GAATACGGTTGTGGCCATTCTCATG 239 327 1347 Antisense
AAGTGAGTTTTCTCTGCGATTTCTT 350 159 1427 Antisense
Sequence Source Affymetrix Proprietary Database