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[185697_at]

Description C36C5.12 /REP_DB=WormBase Gene ID /WP=CE08601 /TR=O16406 /GB=AAB65934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 17.2
(-1.9)
A 		8
(-3)
A 		56
(2.8)
M 		57.4
(3)
A 		49
B 32.7
(2.6)
A 		9.2
(-3)
A 		34.2
(3)
A 		10.1
(-2.8)
A 		25
C 31.7
(-1.5)
A 		73.8
(3)
A 		18.1
(-3)
A 		64.1
(2)
A 		56
avr 27.2
(-3) 		30.3
(-1.9) 		36.1
(0.2) 		43.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.8
(3)
A 		16.9
(-1.1)
A 		6.6
(-2.5)
A 		32
(0.8)
A 		2.5
(-3)
A 		24.4
(-0.2)
A 		46
B 22.2
(3)
A 		22
(2.9)
A 		3.1
(-2.8)
A 		2.3
(-3)
A 		4.3
(-2.4)
A 		5.1
(-2.2)
A 		20
C 4.3
(-3)
A 		25.2
(0.5)
A 		30.1
(1.3)
A 		40
(3)
A 		4.2
(-3)
A 		13.5
(-1.4)
A 		36
avr 25.1
(3) 		21.4
(2) 		13.3
(-0.3) 		24.8
(2.9) 		3.7
(-3) 		14.3
(-0) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 6.3
(-0.9)
A 		1.7
(-3)
A 		14.6
(3)
M 		8.4
(0.1)
A 		13
B 10.4
(3)
A 		2.3
(-2.9)
A 		7.9
(1.2)
A 		2.2
(-3)
A 		8
C 10.5
(-1.3)
A 		21.2
(3)
A 		6.3
(-3)
A 		10.8
(-1.2)
A 		15
avr 9.1
(1.8) 		8.4
(0.1) 		9.6
(3) 		7.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 9
(3)
A 		6
(0.8)
A 		1.4
(-2.6)
A 		8.1
(2.3)
A 		0.8
(-3)
A 		5.9
(0.7)
A 		8
B 7.7
(3)
A 		7.3
(2.7)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		1.8
(-2)
A 		1.9
(-1.9)
A 		7
C 1.6
(-2.7)
A 		7.7
(2.6)
A 		7.7
(2.6)
A 		8.1
(3)
A 		1.3
(-3)
A 		4.5
(-0.2)
A 		7
avr 6.1
(2.1) 		7
(3) 		3.3
(-0.9) 		5.6
(1.5) 		1.3
(-3) 		4.1
(-0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14793
Sequence Type Exemplar sequence
Representative Public ID C36C5.12 NCBI
Target Description C36C5.12 /REP_DB=WormBase Gene ID /WP=CE08601 /TR=O16406 /GB=AAB65934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071468 NCBI Caenorhabditis elegans C36C5.12 (C36C5.12) mRNA, complete cds. 11/11 None
SNAP00000036658 ENSEMBL cdna:SNAP chromosome:CEL140:V:3158276:3158989:-1 11/11 None
GENEFINDER00000036666 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3157858:3158989:-1 11/11 None
C36C5.12 ENSEMBL cdna:known chromosome:CEL140:V:3158276:3159247:-1 gene:C36C5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3158275-3159247(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C5.12
Entrez Gene 183268 Entrez gene
SwissProt O16406 EMBL-EBI
WormBase CE08601 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503869 C36C5.12 [Caenorhabditis elegans] gb|AAB65934.1| Hypothetical protein C36C5.12 [Caenorhabditis elegans] 1.0E-117
blast NP_503869 C36C5.12 [Caenorhabditis elegans] gb|AAB65934.1| Hypothetical protein C36C5.12 [Caenorhabditis elegans] 1.0E-106
blast NP_503869 C36C5.12 [Caenorhabditis elegans] gb|AAB65934.1| Hypothetical protein C36C5.12 [Caenorhabditis elegans] 1.0E-102
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 6.0E-60
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 7.0E-60
blast AAC04397 Hypothetical protein C17B7.3 [Caenorhabditis elegans] ref|NP_503928.1| C17B7.3 [Caenorhabditis elegans] 1.0E-55
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 1.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.0E-96
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.0E-96
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 7.0E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503869.1 1 21-43
C36C5.12 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:185697_AT
ttttctcaagcttgccatcattggtactgtgcttttgggagtggctcacggagcaaatct
aactgctgccgagaaagaaacttattgtgagttgcgatctgccattcaaacattcctttg
tattgagcgtcttcgcgacttcgcagcaaaagtagatgaactcgacatggataagaaaag
tgaactgaaggaattcaagaaaacttgcgattctctaaaaaattgttttgccattacccg
ctgtgggccaaattccacaatggacgaagcagagttgttccgaatggtcgaaaaaaattg
cgaagctgttgtgtacatccacgaagatttttccgattgtagtgataaacttactgcgaa
aaaatcagtttgtttcgacaactgggacccgattccagatggaattcatctagaagaaga
cgaaaagaaggttgagaaaatgaaaaaagagacttgcaagagatatttcgggaaagatga
ctgcatgaagaaggagattgtcgaaacgtgtagccaaaaagaatgggataaatttcgtga
gcagttcatcaatctttcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCAAGCTTGCCATCATTGGT 122 677 72 Antisense
GTGCTTTTGGGAGTGGCTCACGGAG 621 479 100 Antisense
GGAGCAAATCTAACTGCTGCCGAGA 659 519 121 Antisense
GTGAGTTGCGATCTGCCATTCAAAC 533 483 158 Antisense
TTCCTTTGTATTGAGCGTCTTCGCG 500 695 184 Antisense
CGTCTTCGCGACTTCGCAGCAAAAG 13 247 199 Antisense
ATTACCCGCTGTGGGCCAAATTCCA 331 11 304 Antisense
AGCAGAGTTGTTCCGAATGGTCGAA 289 77 339 Antisense
GCGAAGCTGTTGTGTACATCCACGA 476 289 371 Antisense
GACAACTGGGACCCGATTCCAGATG 506 363 448 Antisense
TGAGCAGTTCATCAATCTTTCCTCC 474 569 609 Antisense
Sequence Source Affymetrix Proprietary Database