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[185696_at]

Description C29F9.13 /REP_DB=WormBase Gene ID /WP=CE08461 /TR=Q9TZB4 /GB=AAC68755.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 42.4
(-3)
A 		46.4
(-1.9)
A 		61.8
(2.4)
A 		63.8
(3)
A 		21
B 59.6
(0.1)
A 		80.5
(3)
A 		71.9
(1.8)
A 		37
(-3)
A 		44
C 20.8
(-3)
A 		59.9
(-0.6)
A 		55.2
(-0.9)
A 		118.3
(3)
A 		98
avr 40.9
(-3) 		62.3
(1) 		63
(1.1) 		73
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 63.3
(-1.6)
A 		37.4
(-3)
A 		96.6
(0.2)
A 		149.3
(3)
P 		88.9
(-0.2)
A 		53.4
(-2.1)
A 		112
B 67.1
(-0.3)
A 		73.7
(0.3)
A 		58.3
(-1.1)
A 		103.7
(3)
A 		96.1
(2.3)
A 		37.8
(-3)
A 		66
C 28.3
(-3)
A 		43.1
(-2.5)
A 		69.9
(-1.5)
A 		196.7
(3)
A 		104.4
(-0.3)
A 		44.5
(-2.4)
A 		168
avr 52.9
(-2.6) 		51.4
(-2.6) 		74.9
(-1.3) 		149.9
(3) 		96.5
(-0.1) 		45.2
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.4
(2.3)
A 		10.1
(-2.3)
A 		16.2
(3)
A 		9.3
(-3)
A 		7
B 19
(2.6)
A 		19.9
(3)
A 		16.7
(1.4)
A 		7.9
(-3)
A 		12
C 6.9
(-3)
A 		17.2
(1.8)
A 		19.2
(2.7)
A 		19.9
(3)
A 		13
avr 13.8
(-1.3) 		15.7
(1) 		17.4
(3) 		12.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11.7
(-3)
A 		13.3
(-2.6)
A 		21
(-0.9)
A 		37.9
(3)
P 		26.8
(0.5)
A 		13
(-2.7)
A 		26
B 23.3
(-0.8)
A 		24.5
(-0.5)
A 		14.2
(-3)
A 		27.5
(0.2)
A 		39
(3)
A 		14.1
(-3)
A 		25
C 10.5
(-3)
A 		13.1
(-2.5)
A 		17.8
(-1.5)
A 		39.6
(3)
A 		33.8
(1.8)
A 		14.9
(-2.1)
A 		29
avr 15.2
(-2.7) 		17
(-2.1) 		17.7
(-1.9) 		35
(3) 		33.2
(2.5) 		14
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8208
Sequence Type Exemplar sequence
Representative Public ID C29F9.13 NCBI
Target Description C29F9.13 /REP_DB=WormBase Gene ID /WP=CE08461 /TR=Q9TZB4 /GB=AAC68755.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064749 NCBI Caenorhabditis elegans C29F9.13 (C29F9.13) mRNA, complete cds. 11/11 None
C29F9.13 ENSEMBL cdna:known chromosome:CEL140:III:130179:130749:-1 gene:C29F9.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:130178-130749(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.13
Entrez Gene 183029 Entrez gene
SwissProt Q9TZB4 EMBL-EBI
WormBase CE08461 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68755 Hypothetical protein C29F9.13 [Caenorhabditis elegans] ref|NP_497150.1| C29F9.13 [Caenorhabditis elegans] 3.0E-78
blast AAG45572 Hypothetical protein ZK6.2 [Caenorhabditis elegans] ref|NP_503191.1| ZK6.2 [Caenorhabditis elegans] 3.0E-29
blast AAG45578 Hypothetical protein ZK6.1 [Caenorhabditis elegans] ref|NP_503192.1| ZK6.1 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.5E-25
Sequence
Target Sequence 
>C. ELEGANS:185696_AT
gagtaggtcatccacgaaggcgagaaaaggcacaccacgcccgcccgcgctatctcaatc
tgtgtactgcggccgacgctacacgggacctcacaccacttttttttttgaaataactaa
tgacgagtacctgctgctaagtgttttgatcttttgtaatccagcactactgcaactttc
tgaaaacggaaagctcttgctaaccatctatcgaaacttgtattgctctgcacttcttca
acattgcctattaaataatcaaaaatcgggaccagctcgttttactgagctactcggagt
ttatcaagctattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTAGGTCATCCACGAAGGCGAGA 385 399 30 Antisense
GGCGAGAAAAGGCACACCACGCCCG 107 543 48 Antisense
GCTATCTCAATCTGTGTACTGCGGC 677 303 78 Antisense
GACGAGTACCTGCTGCTAAGTGTTT 193 379 151 Antisense
GATCTTTTGTAATCCAGCACTACTG 145 419 177 Antisense
AGCTCTTGCTAACCATCTATCGAAA 521 79 221 Antisense
TCGAAACTTGTATTGCTCTGCACTT 556 601 240 Antisense
CTCTGCACTTCTTCAACATTGCCTA 466 231 255 Antisense
AAATCGGGACCAGCTCGTTTTACTG 113 1 292 Antisense
CTCGTTTTACTGAGCTACTCGGAGT 614 231 305 Antisense
CTACTCGGAGTTTATCAAGCTATTG 255 227 319 Antisense
Sequence Source Affymetrix Proprietary Database