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[185695_s_at]

Description F53E10.6 /REP_DB=WormBase Gene ID /WP=CE10930 /TR=P91318 /GB=AAB42292.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 58      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 256.3
(-1.1)
P 		281.1
(0.8)
A 		310.9
(3)
P 		231.3
(-3)
A 		80
B 229.6
(-2.5)
M 		349
(3)
M 		315.9
(1.5)
P 		219.3
(-3)
A 		130
C 308.1
(-0.2)
P 		360.7
(1.6)
P 		398.2
(3)
P 		231.7
(-3)
A 		167
avr 264.7
(-1) 		330.3
(2.4) 		341.7
(3) 		227.4
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 145.9
(-3)
A 		215.1
(0.8)
P 		223.5
(1.3)
A 		246.1
(2.5)
A 		255.3
(3)
A 		207.7
(0.4)
A 		109
B 262.1
(-1.5)
A 		311.3
(1.4)
A 		237.7
(-3)
A 		260
(-1.7)
A 		266.6
(-1.3)
M 		337.3
(3)
P 		100
C 226.5
(-1.4)
M 		201.8
(-2.4)
A 		187.4
(-3)
A 		216.2
(-1.8)
A 		220.7
(-1.6)
M 		331.4
(3)
P 		144
avr 211.5
(-3) 		242.7
(-0.7) 		216.2
(-2.7) 		240.8
(-0.8) 		247.5
(-0.3) 		292.1
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 93.3
(3)
P 		61
(-0.3)
A 		81.3
(1.8)
P 		33.9
(-3)
A 		59
B 73.2
(1)
M 		86.2
(3)
M 		73.2
(1)
P 		46.7
(-3)
A 		40
C 102
(0.8)
P 		103.7
(0.9)
P 		138.8
(3)
P 		39.1
(-3)
A 		100
avr 89.5
(2.1) 		83.6
(1.5) 		97.8
(3) 		39.9
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 26.9
(-3)
A 		76.5
(2.9)
P 		48.7
(-0.4)
A 		62.4
(1.3)
A 		77
(3)
A 		50.6
(-0.2)
A 		50
B 91.2
(-0)
A 		103.6
(1)
A 		57.7
(-3)
A 		68.9
(-2)
A 		108.3
(1.5)
M 		125.8
(3)
P 		68
C 84
(0.6)
M 		61.6
(-1.4)
A 		47.7
(-2.6)
A 		43.5
(-3)
A 		71.4
(-0.5)
M 		110.9
(3)
P 		67
avr 67.4
(-0.8) 		80.6
(0.9) 		51.4
(-3) 		58.3
(-2.1) 		85.6
(1.6) 		95.8
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185695_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15027
Sequence Type Exemplar sequence
Representative Public ID F53E10.6 NCBI
Target Description F53E10.6 /REP_DB=WormBase Gene ID /WP=CE10930 /TR=P91318 /GB=AAB42292.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071312 NCBI Caenorhabditis elegans F53E10.6 (F53E10.6) mRNA, complete cds. 11/11 None
SNAP00000043463 ENSEMBL cdna:SNAP chromosome:CEL140:V:2602070:2602887:-1 11/11 None
GENEFINDER00000043468 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2602070:2602887:-1 11/11 None
F53E10.6.1 ENSEMBL cdna:known chromosome:CEL140:V:2602030:2602892:-1 gene:F53E10.6 11/11 None
F53E10.6.2 ENSEMBL cdna:known chromosome:CEL140:V:2602070:2602890:-1 gene:F53E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2602069-2602887(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53E10.6
Entrez Gene 178728 Entrez gene
SwissProt P91318 EMBL-EBI
WormBase CE10930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42292 Hypothetical protein F53E10.6 [Caenorhabditis elegans] ref|NP_503713.1| F53E10.6 [Caenorhabditis elegans] 1.0E-65
blast CAE62512 Hypothetical protein CBG06617 [Caenorhabditis briggsae] 7.0E-57
Sequence
Target Sequence 
>C. ELEGANS:185695_S_AT
aaccgcgatcgattagtcgtcacagaagactcggacgacgataatgagagggaagagatg
tcatcaggcggagaaagcggagaagaaggcccttcctctgtagatggtggagccggcgac
gccgacgagacagttgccttcccagccattgagaggagaaagaagaaggtgatcaagaag
ctgacaaagaaggagcaaagtctgaagaagagtgtcaaggaataccggattaagttggct
ctggtcaagccggatatcaccaccgaccgggagaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGCGATCGATTAGTCGTCACAG 512 145 25 Antisense
GTCACAGAAGACTCGGACGACGATA 127 463 43 Antisense
AGAGATGTCATCAGGCGGAGAAAGC 417 67 78 Antisense
GCGGAGAAGAAGGCCCTTCCTCTGT 240 291 101 Antisense
GGCCCTTCCTCTGTAGATGGTGGAG 424 541 112 Antisense
TCTGTAGATGGTGGAGCCGGCGACG 545 607 121 Antisense
TTGCCTTCCCAGCCATTGAGAGGAG 146 703 158 Antisense
GGAATACCGGATTAAGTTGGCTCTG 371 529 243 Antisense
GTTGGCTCTGGTCAAGCCGGATATC 682 433 258 Antisense
TGGTCAAGCCGGATATCACCACCGA 675 551 266 Antisense
GATATCACCACCGACCGGGAGAAGG 184 423 277 Antisense
Sequence Source Affymetrix Proprietary Database