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[185694_s_at] 7TM chemoreceptor, sri family /// 7TM chemoreceptor, sri family

Description M01G12.13 /REP_DB=WormBase Gene ID /WP=CE18076 /TR=O62318 /GB=CAB04621.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 1.9
(-3)
A 		5.5
(-2.7)
A 		2.6
(-2.9)
A 		79.4
(3)
A 		78
B 13.7
(-1.1)
A 		3
(-3)
A 		9.7
(-1.8)
A 		37.1
(3)
A 		34
C 9
(-2.7)
A 		2.6
(-3)
A 		1.7
(-3)
A 		145.6
(3)
P 		144
avr 8.2
(-2.7) 		3.7
(-3) 		4.7
(-2.9) 		87.4
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 6.5
(-1.9)
A 		27.9
(3)
A 		8.9
(-1.4)
A 		18.1
(0.7)
A 		5
(-2.3)
A 		1.8
(-3)
A 		26
B 4.2
(-2.4)
A 		16.8
(0.4)
A 		14.3
(-0.2)
A 		5.6
(-2.1)
A 		29
(3)
A 		1.2
(-3)
A 		28
C 6.8
(-2.5)
A 		59.9
(3)
A 		2.1
(-2.9)
A 		2.4
(-2.9)
A 		1.6
(-3)
A 		10.6
(-2.1)
A 		58
avr 5.8
(-2.7) 		34.9
(3) 		8.4
(-2.2) 		8.7
(-2.2) 		11.9
(-1.5) 		4.5
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 0.7
(-3)
A 		1.2
(-2.7)
A 		0.7
(-3)
A 		11.6
(3)
A 		11
B 4.4
(0.1)
A 		0.7
(-3)
A 		2.2
(-1.8)
A 		7.9
(3)
A 		7
C 3
(-2.4)
A 		0.7
(-3)
A 		0.6
(-3)
A 		24.6
(3)
P 		24
avr 2.7
(-2.2) 		0.9
(-3) 		1.2
(-2.9) 		14.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.2
(-2.5)
A 		9.9
(3)
A 		1.9
(-2.1)
A 		4.6
(-0.3)
A 		1.5
(-2.3)
A 		0.4
(-3)
A 		10
B 1.5
(-2.4)
A 		5.6
(-0.3)
A 		3.5
(-1.4)
A 		1.5
(-2.4)
A 		11.8
(3)
A 		0.4
(-3)
A 		11
C 2.5
(-2.3)
A 		18.3
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		3.5
(-2)
A 		18
avr 1.7
(-2.8) 		11.3
(3) 		2
(-2.6) 		2.2
(-2.5) 		4.6
(-1.1) 		1.4
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1623
Sequence Type Exemplar sequence
Representative Public ID M01G12.13 NCBI
Target Description M01G12.13 /REP_DB=WormBase Gene ID /WP=CE18076 /TR=O62318 /GB=CAB04621.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060667(11), NM_060668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060667 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-14) (sri-14) mRNA, complete cds. 11/11 None
NM_060668 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-13) (sri-13) mRNA, complete cds. 11/11 None
GENEFINDER00000024233 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12140675:12144587:-1 9/11 None
M01G12.1 ENSEMBL cdna:known chromosome:CEL140:I:12142390:12144587:-1 gene:M01G12.1 11/11 None
M01G12.13 ENSEMBL cdna:known chromosome:CEL140:I:12148682:12150879:1 gene:M01G12.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024230 5/11 Cross Hyb Matching Probes None
SNAP00000007304 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12148612-12150697(+) 100.0 100.0
chrI:12142433-12144518(-) 99.9 99.9
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
7TM chemoreceptor, sri family
Gene Symbol sri-14
sri-13
Ensembl M01G12.1
M01G12.13
Entrez Gene 187378 Entrez gene
187388 Entrez gene
SwissProt O62308 EMBL-EBI
O62318 EMBL-EBI
WormBase CE18066 Wormbase
CE33674 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04610 Hypothetical protein M01G12.1 [Caenorhabditis elegans] ref|NP_493068.1| Serpentine Receptor, class I family member (sri-14) [Caenorhabditis elegans] 0.0
blast CAB04120 Hypothetical protein M01G12.13 [Caenorhabditis elegans] emb|CAB04621.2| Hypothetical protein M01G12.13 [Caenorhabditis elegans] ref|NP_493069.2| Serpentine Receptor, class I family member (sri-13) [Caenorhabditis elegans] 0.0
blast CAB04610 Hypothetical protein M01G12.1 [Caenorhabditis elegans] ref|NP_493068.1| Serpentine Receptor, class I family member (sri-14) [Caenorhabditis elegans] 1.0E-137
blast CAB04120 Hypothetical protein M01G12.13 [Caenorhabditis elegans] emb|CAB04621.2| Hypothetical protein M01G12.13 [Caenorhabditis elegans] ref|NP_493069.2| Serpentine Receptor, class I family member (sri-13) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.8E-101
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.6E-102
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493068.1 7 15-37,57-79,99-118,139-161,195-226,247-269,279-301
NP_493069.2 7 15-37,57-79,99-118,139-161,203-225,246-268,283-305
M01G12.1 7 15-37,57-79,99-118,139-161,195-226,247-269,279-301
M01G12.13 7 15-37,57-79,99-118,139-161,203-225,246-268,283-305
GENEFINDER00000024233 5 15-37,57-79,99-118,139-161,195-217
Sequence
Target Sequence 
>C. ELEGANS:185694_S_AT
ggctcattttttgccatttgtgacagctttttgcttctggaattccagattaacagctaa
agagcgaatggatttggtgatgaataactggccacaatgcgctcattggctaaaatttcc
ggcttttgaggtgtatgattatcatctgaatccatggcttgctgttgtaggaattggcgc
attttttgtgctttttatggttttttcatactgcatattcctgggagttcaaacattact
catcctacaacaacatcgaaaatccatgtctcggcagacgtatcaagcgcacaaaaatgc
acttttcagtttagtcatgcaaatagtgcttcctggcgtttttatagttgtgccactttg
tatttgtatgtttgtagttgttcaaggagatgtgcatttgcaagagttcgccacggacac
aatgttcttcgtgagctcccattcaatgtgctcctgcataattatgatcatcagcaaccc
aaagtaccggagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCATTTTTTGCCATTTGTGACA 496 539 441 Antisense
GACAGCTTTTTGCTTCTGGAATTCC 247 369 462 Antisense
GAATAACTGGCCACAATGCGCTCAT 355 327 522 Antisense
GCGCTCATTGGCTAAAATTTCCGGC 666 287 539 Antisense
CATTACTCATCCTACAACAACATCG 469 215 674 Antisense
TCTCGGCAGACGTATCAAGCGCACA 23 611 709 Antisense
AAATAGTGCTTCCTGGCGTTTTTAT 194 115 761 Antisense
GCATTTGCAAGAGTTCGCCACGGAC 256 309 834 Antisense
TTCGCCACGGACACAATGTTCTTCG 537 697 847 Antisense
GTGAGCTCCCATTCAATGTGCTCCT 600 483 871 Antisense
TCAGCAACCCAAAGTACCGGAGCGT 566 623 911 Antisense
Sequence Source Affymetrix Proprietary Database