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[185692_at]

Description Y43F8B.14 /REP_DB=WormBase Gene ID /WP=CE21898 /TR=Q9XWW9 /GB=CAA21518.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 63.9
(0.7)
P 		32.8
(-1.5)
A 		10.9
(-3)
A 		96.4
(3)
P 		86
B 70.1
(0.7)
P 		20.3
(-2.1)
A 		4.1
(-3)
A 		112.4
(3)
P 		108
C 111.4
(0.4)
P 		42.9
(-2.4)
A 		29.5
(-3)
A 		174.8
(3)
P 		145
avr 81.8
(0.6) 		32
(-2.1) 		14.8
(-3) 		127.9
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 75.7
(2.6)
M 		42.9
(-0.2)
P 		80.5
(3)
P 		48
(0.2)
A 		61.3
(1.4)
P 		10.1
(-3)
A 		70
B 39.9
(-3)
A 		78.4
(0.5)
P 		106.3
(3)
P 		46.9
(-2.4)
A 		63.2
(-0.9)
P 		71.6
(-0.1)
P 		66
C 54.8
(-2.4)
P 		50.5
(-3)
M 		91.7
(3)
A 		52.2
(-2.8)
M 		56.3
(-2.2)
P 		52.7
(-2.7)
P 		41
avr 56.8
(-1.5) 		57.3
(-1.4) 		92.8
(3) 		49
(-2.5) 		60.3
(-1.1) 		44.8
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 23.3
(3)
P 		7.1
(-1.7)
A 		2.8
(-3)
A 		14.1
(0.3)
P 		21
B 22.4
(2.6)
P 		5
(-1.9)
A 		0.9
(-3)
A 		23.9
(3)
P 		23
C 36.9
(3)
P 		12.3
(-2.5)
A 		10.3
(-3)
A 		29.5
(1.3)
P 		27
avr 27.5
(3) 		8.1
(-2.1) 		4.7
(-3) 		22.5
(1.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 14
(1.3)
M 		15.3
(1.8)
P 		17.5
(2.6)
P 		12.2
(0.6)
A 		18.5
(3)
P 		2.5
(-3)
A 		16
B 13.9
(-2.4)
A 		26.1
(2.7)
P 		25.8
(2.6)
P 		12.4
(-3)
A 		25.7
(2.6)
P 		26.7
(3)
P 		14
C 20.3
(1.6)
P 		15.4
(-0.7)
M 		23.3
(3)
A 		10.5
(-3)
M 		18.2
(0.6)
P 		17.6
(0.3)
P 		13
avr 16.1
(-0.5) 		18.9
(1.1) 		22.2
(3) 		11.7
(-3) 		20.8
(2.2) 		15.6
(-0.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12540
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.14 NCBI
Target Description Y43F8B.14 /REP_DB=WormBase Gene ID /WP=CE21898 /TR=Q9XWW9 /GB=CAA21518.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075384 NCBI Caenorhabditis elegans Y43F8B.14 (Y43F8B.14) mRNA, complete cds. 11/11 None
SNAP00000027170 ENSEMBL cdna:SNAP chromosome:CEL140:V:19455234:19457604:-1 11/11 None
GENEFINDER00000027189 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19454835:19457604:-1 11/11 None
Y43F8B.14 ENSEMBL cdna:known chromosome:CEL140:V:19454835:19457604:-1 gene:Y43F8B.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19454834-19457604(-) 98.43 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.14
Entrez Gene 189876 Entrez gene
SwissProt Q9XWW9 EMBL-EBI
WormBase CE21898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21518 Hypothetical protein Y43F8B.14 [Caenorhabditis elegans] ref|NP_507785.1| Y43F8B.14 [Caenorhabditis elegans] 0.0
blast CAB03922 Hypothetical protein C25F9.4 [Caenorhabditis elegans] ref|NP_507778.3| C25F9.4 [Caenorhabditis elegans] 1.0E-174
blast CAB07266 Hypothetical protein M04C3.2 [Caenorhabditis elegans] ref|NP_507784.2| M04C3.2 [Caenorhabditis elegans] 1.0E-172
blast CAB03922 Hypothetical protein C25F9.4 [Caenorhabditis elegans] ref|NP_507778.3| C25F9.4 [Caenorhabditis elegans] 1.0E-169
Sequence
Target Sequence 
>C. ELEGANS:185692_AT
cgcaacacaaattggctcgttttttgaattttgaaaaatatggtgaaagtcataatttga
taaaatcggttacttcgggaaatgcaaaagaaggtgaaaaagaaggcattgcagaactcg
ttaaaaacatggaacagtttttgaagcatgttaccatgttgttcccaagaagctcgaatg
attatgaaaaacacataactaatgcagaaaaagaattagaagaaaacccgcccaacatcc
gcaaattttgcagcaatctgtgggccgccattgcctgttacaccaaagaatattactacg
gaaagttaaagttcgaaatttgtgcagaaagtgatgaggatttagaggaaatgtatgctt
cattttgtgctgggcttaggggcccgtcggaagcgtcggaagcgtcggaagccgttttta
taatggaagtatgggtggaagtgtattggaacttctcagaaagtgagcaaagtcggtgtt
tcattggaaacacaaagatgaaagaagttatcgatcaattgaaaaaagcaatcaatttta
ttaaaatagcagagcccaattcgatagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCAACACAAATTGGCTCGTTTTTT 75 255 1166 Antisense
GAAGGCATTGCAGAACTCGTTAAAA 192 333 1267 Antisense
GCATGTTACCATGTTGTTCCCAAGA 598 309 1311 Antisense
GTTGTTCCCAAGAAGCTCGAATGAT 279 437 1323 Antisense
ATTTTGCAGCAATCTGTGGGCCGCC 77 15 1410 Antisense
CGCCATTGCCTGTTACACCAAAGAA 617 257 1431 Antisense
GTATGCTTCATTTTGTGCTGGGCTT 619 455 1518 Antisense
TTTGTGCTGGGCTTAGGGGCCCGTC 153 607 1529 Antisense
GCGTCGGAAGCCGTTTTTATAATGG 194 259 1567 Antisense
GTGAGCAAAGTCGGTGTTTCATTGG 101 483 1628 Antisense
ATAGCAGAGCCCAATTCGATAGAGA 526 21 1711 Antisense
Sequence Source Affymetrix Proprietary Database