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[185691_s_at]

Description F42G8.10 /REP_DB=WormBase Gene ID /WP=CE17069 /TR=O44509 /GB=AAB92069.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 27      6grp_total > 52      4grp_total > 48      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3149
1 2 3 4 range
A 6293.9
(-3)
P 		8963
(2.4)
P 		9238.8
(3)
P 		7551.4
(-0.4)
P 		2945
B 6710
(-3)
P 		7992.6
(0)
P 		9273.5
(3)
P 		6718.6
(-3)
P 		2564
C 6124.2
(-3)
P 		7392.9
(1.8)
P 		7699.1
(3)
P 		7363.1
(1.7)
P 		1575
avr 6376
(-3) 		8116.2
(1.4) 		8737.1
(3) 		7211
(-0.9) 		2361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4932
1 2 3 4 5 6 range
A 6352.4
(-0.5)
P 		7021.2
(0.5)
P 		8751.4
(3)
P 		7988.3
(1.9)
P 		5872.2
(-1.2)
P 		4591.8
(-3)
P 		4160
B 6605.7
(0.5)
P 		6726.7
(0.7)
P 		8192.9
(3)
P 		7353.8
(1.7)
P 		7204.3
(1.4)
P 		4409.2
(-3)
P 		3784
C 6169.3
(-0.7)
P 		6057.9
(-0.8)
P 		9209.7
(3)
P 		6548.2
(-0.2)
P 		7083.3
(0.4)
P 		4277.6
(-3)
P 		4932
avr 6375.8
(-0.3) 		6601.9
(0) 		8718
(3) 		7296.8
(1) 		6719.9
(0.2) 		4426.2
(-3) 		4292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1578
1 2 3 4 range
A 2291.6
(2.4)
P 		1945.6
(0.8)
P 		2415.2
(3)
P 		1105.4
(-3)
P 		1310
B 2139.8
(2.9)
P 		1974
(1.5)
P 		2148.9
(3)
P 		1431.7
(-3)
P 		717
C 2027.3
(0.3)
P 		2125.5
(0.7)
P 		2683.4
(3)
P 		1241.5
(-3)
P 		1442
avr 2152.9
(1.6) 		2015
(0.9) 		2415.8
(3) 		1259.5
(-3) 		1156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1809
1 2 3 4 5 6 range
A 1171
(-2.8)
P 		2497.1
(3)
P 		1905.9
(0.4)
P 		2026
(1)
P 		1772
(-0.2)
P 		1118
(-3)
P 		1379
B 2298.5
(0.1)
P 		2239
(-0.2)
P 		1989.5
(-1.4)
P 		1947.8
(-1.6)
P 		2927
(3)
P 		1644.2
(-3)
P 		1283
C 2286.7
(2.7)
P 		1848.5
(0.1)
P 		2344
(3)
P 		1316.9
(-3)
P 		2292.1
(2.7)
P 		1432
(-2.3)
P 		1027
avr 1918.7
(0.4) 		2194.9
(2.1) 		2079.8
(1.4) 		1763.6
(-0.6) 		2330.4
(3) 		1398.1
(-3) 		932
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185691_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9266
Sequence Type Exemplar sequence
Representative Public ID F42G8.10 NCBI
Target Description F42G8.10 /REP_DB=WormBase Gene ID /WP=CE17069 /TR=O44509 /GB=AAB92069.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028031(11), NM_001028030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028031 NCBI Caenorhabditis elegans F42G8.10b (F42G8.10) mRNA, complete cds. 11/11 None
NM_001028030 NCBI Caenorhabditis elegans F42G8.10a (F42G8.10) mRNA, complete cds. 11/11 None
SNAP00000028275 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8129107:8130212:-1 11/11 None
GENEFINDER00000028285 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8129107:8130212:-1 11/11 None
F42G8.10b.1 ENSEMBL cdna:known chromosome:CEL140:IV:8128963:8130212:-1 gene:F42G8.10 11/11 None
F42G8.10b.3 ENSEMBL cdna:known chromosome:CEL140:IV:8128991:8130217:-1 gene:F42G8.10 11/11 None
F42G8.10a ENSEMBL cdna:known chromosome:CEL140:IV:8129107:8130212:-1 gene:F42G8.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F42G8.10b.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8129112-8130218(-) 100.0 100.0
Public Domain and Genome References
Ensembl F42G8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92069 Hypothetical protein F42G8.10a [Caenorhabditis elegans] ref|NP_001023201.1| F42G8.10a [Caenorhabditis elegans] 7.0E-98
blast CAE58417 Hypothetical protein CBG01548 [Caenorhabditis briggsae] 5.0E-92
blast AAB92069 Hypothetical protein F42G8.10a [Caenorhabditis elegans] ref|NP_001023201.1| F42G8.10a [Caenorhabditis elegans] 3.0E-28
blast AAO91720 Hypothetical protein F42G8.10b [Caenorhabditis elegans] ref|NP_001023202.1| F42G8.10b [Caenorhabditis elegans] 3.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023201.1 1 105-124
F42G8.10a 1 105-124
SNAP00000028275 1 105-124
GENEFINDER00000028285 1 105-124
Sequence
Target Sequence 
>C. ELEGANS:185691_S_AT
caactaagccgccttcaaacgtcggccagcatccggtcgctgggttttagacgtctcgct
tcttcgcactctcattcagatgctaaagttgagagaaagccagataactacagacccgga
actgactcatatgcctatgaaaatccatggccgaagttgaatggcggacgtttggattgg
ctgttcggagatggatggagaagacctctcgcaaaggatcagggagcaaagatgagaaga
gaatggatttggttctcgcaaattgcacatgacgagcacaaggattgggctcgttttcat
caagcagctttccttcttttcactgttcttaccacctggttcacttgctggatcatgttt
gcccgtccagattggccaatgggaagagaatgggcattgagagaagctcatttggaaatc
gctagacgagagaaggccggactaccacttatcagtccagacctgattccaagagaccgc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTAAGCCGCCTTCAAACGTCGG 653 187 22 Antisense
CGGTCGCTGGGTTTTAGACGTCTCG 2 241 55 Antisense
TTCTTCGCACTCTCATTCAGATGCT 119 689 81 Antisense
ACCCGGAACTGACTCATATGCCTAT 106 89 135 Antisense
GCGGACGTTTGGATTGGCTGTTCGG 650 293 185 Antisense
GGGCTCGTTTTCATCAAGCAGCTTT 356 493 308 Antisense
CACTTGCTGGATCATGTTTGCCCGT 309 197 363 Antisense
TTTGCCCGTCCAGATTGGCCAATGG 253 663 379 Antisense
GACGAGAGAAGGCCGGACTACCACT 62 379 446 Antisense
ACTACCACTTATCAGTCCAGACCTG 296 101 462 Antisense
CCAGACCTGATTCCAAGAGACCGCG 233 273 478 Antisense
Sequence Source Affymetrix Proprietary Database