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[185690_at]

Description C25E10.8 /REP_DB=WormBase Gene ID /WP=CE06870 /TR=Q18157 /GB=AAA92313.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 93      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 68      6grp_total > 75      4grp_total > 03      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5659
1 2 3 4 range
A 1490
(-2.1)
P 		1111.2
(-2.5)
P 		683.1
(-3)
P 		6342.1
(3)
P 		5659
B 1660.9
(-1.9)
P 		918.4
(-2.8)
P 		743.6
(-3)
P 		5580
(3)
P 		4836
C 1312.9
(-2.2)
P 		1012.5
(-2.6)
P 		707
(-3)
P 		5543.3
(3)
P 		4836
avr 1487.9
(-2.1) 		1014
(-2.6) 		711.2
(-3) 		5821.8
(3) 		5111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1689
1 2 3 4 5 6 range
A 1748.2
(-0.1)
P 		1047.4
(-3)
P 		1801.6
(0.1)
P 		2404.3
(2.5)
P 		1738.8
(-0.2)
P 		2515.3
(3)
P 		1468
B 1846.5
(-0.1)
P 		1405.2
(-3)
P 		1910
(0.4)
P 		2094.3
(1.6)
P 		2213.5
(2.4)
P 		2306.7
(3)
P 		902
C 2117.4
(0.6)
P 		1168.4
(-3)
P 		1860.7
(-0.4)
P 		2735.9
(3)
P 		1900.5
(-0.2)
P 		2643.5
(2.6)
P 		1568
avr 1904
(0.3) 		1207
(-3) 		1857.4
(0) 		2411.5
(2.6) 		1950.9
(0.5) 		2488.5
(3) 		1282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1017
1 2 3 4 range
A 542.5
(-0.1)
P 		241.2
(-2.5)
P 		178.6
(-3)
P 		928.4
(3)
P 		750
B 529.6
(-0.9)
P 		226.8
(-2.7)
P 		172.3
(-3)
P 		1189.1
(3)
P 		1017
C 434.6
(-1.4)
P 		291.1
(-2.6)
P 		246.4
(-3)
P 		934.7
(3)
P 		688
avr 502.2
(-0.8) 		253
(-2.6) 		199.1
(-3) 		1017.4
(3) 		818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 322.3
(-3)
P 		372.5
(-2)
P 		392.4
(-1.6)
P 		609.8
(2.9)
P 		524.7
(1.2)
P 		612.4
(3)
P 		290
B 642.5
(-0.5)
P 		467.7
(-2.9)
P 		463.8
(-3)
P 		554.7
(-1.7)
P 		899.3
(3)
P 		860.2
(2.5)
P 		436
C 784.8
(1.9)
P 		356.5
(-3)
P 		473.6
(-1.7)
P 		550.2
(-0.8)
P 		615
(-0.1)
P 		884.9
(3)
P 		528
avr 583.2
(-0.1) 		398.9
(-3) 		443.3
(-2.3) 		571.6
(-0.3) 		679.7
(1.4) 		785.8
(3) 		387
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11879
Sequence Type Exemplar sequence
Representative Public ID C25E10.8 NCBI
Target Description C25E10.8 /REP_DB=WormBase Gene ID /WP=CE06870 /TR=Q18157 /GB=AAA92313.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072944 NCBI Caenorhabditis elegans C25E10.8 (C25E10.8) mRNA, complete cds. 11/11 None
GENEFINDER00000038747 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9055949:9060919:-1 10/11 None
C25E10.8 ENSEMBL cdna:known chromosome:CEL140:V:9055904:9056547:-1 gene:C25E10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038738 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9055949-9056469(-) 99.52 99.52
Public Domain and Genome References
Gene Title
Ensembl C25E10.8
Entrez Gene 182892 Entrez gene
SwissProt Q18157 EMBL-EBI
WormBase CE06870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92315 Hypothetical protein C25E10.10 [Caenorhabditis elegans] ref|NP_505347.1| C25E10.10 [Caenorhabditis elegans] 8.0E-86
blast AAA92313 Hypothetical protein C25E10.8 [Caenorhabditis elegans] ref|NP_505345.1| C25E10.8 [Caenorhabditis elegans] 2.0E-75
blast AAA92313 Hypothetical protein C25E10.8 [Caenorhabditis elegans] ref|NP_505345.1| C25E10.8 [Caenorhabditis elegans] 1.0E-73
blast AAA92314 Inhibitor of serine protease like protein protein 2, isoform a [Caenorhabditis elegans] ref|NP_505346.1| Inhibitor of Serine protease Like protein family member (isl-2) [Caenorhabditis elegans] 3.0E-62
blast AAA92314 Inhibitor of serine protease like protein protein 2, isoform a [Caenorhabditis elegans] ref|NP_505346.1| Inhibitor of Serine protease Like protein family member (isl-2) [Caenorhabditis elegans] 4.0E-53
blast CAE72086 Hypothetical protein CBG19174 [Caenorhabditis briggsae] 2.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.3E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.3E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.4E-21
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.8E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.7E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.3E-23
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038747 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:185690_AT
gagaacttttgtcataattgcctgttttattgctgctgcgacagctgccaataagacatg
tggagccaacgaggaaatggttgcatgccatgatcactgtgagacacaatgcggatacac
tccaaaagtgtgtctatctgctcaatgtattgaaaacgcatgcgactgcaagaaaggatt
tgtgcgtaattcacttggaaaatgtgtcgatatttccacctgtaccaaggaaactagcaa
atgtccggaaaatgagacattcttccgatgcggaaccgcttgtgagccaacttgtgaaaa
accaggaccaagaccatgtaccagacaatgcattgtaaatgtttgccagtgttccagtgg
ttttgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACTTTTGTCATAATTGCCTGT 124 391 15 Antisense
GCCTGTTTTATTGCTGCTGCGACAG 583 281 34 Antisense
GCTGCGACAGCTGCCAATAAGACAT 55 297 49 Antisense
TTGCATGCCATGATCACTGTGAGAC 38 703 95 Antisense
GAGACACAATGCGGATACACTCCAA 417 393 115 Antisense
AAAGTGTGTCTATCTGCTCAATGTA 526 121 139 Antisense
TGTGTCGATATTTCCACCTGTACCA 60 555 217 Antisense
AATGAGACATTCTTCCGATGCGGAA 423 165 265 Antisense
GAACCGCTTGTGAGCCAACTTGTGA 149 347 287 Antisense
AACCAGGACCAAGACCATGTACCAG 243 145 314 Antisense
GCCAGTGTTCCAGTGGTTTTGTCCG 297 281 359 Antisense
Sequence Source Affymetrix Proprietary Database