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[185689_at]

Description F36F12.7 /REP_DB=WormBase Gene ID /WP=CE17787 /TR=O76402 /GB=AAC19206.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 58      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 12.2
(-2.9)
A 		16.6
(-2.3)
A 		60.2
(3)
A 		11.3
(-3)
A 		49
B 11
(-2.2)
A 		55.9
(3)
A 		4.1
(-3)
A 		8.9
(-2.4)
A 		52
C 33.2
(1.8)
A 		18.8
(-0.8)
A 		40
(3)
A 		6.5
(-3)
A 		34
avr 18.8
(-0.7) 		30.4
(2) 		34.8
(3) 		8.9
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 18.2
(-2.6)
A 		17.9
(-2.6)
A 		9.7
(-3)
A 		49.6
(-1.1)
A 		90.8
(1)
A 		132.6
(3)
P 		123
B 27.3
(-2.4)
A 		15.9
(-3)
A 		54.4
(-0.9)
A 		40.3
(-1.6)
A 		102.3
(1.8)
A 		124.3
(3)
P 		108
C 46.7
(-1.7)
A 		21.8
(-2.5)
A 		8.3
(-3)
A 		76.5
(-0.7)
A 		66.9
(-1)
A 		187
(3)
P 		179
avr 30.7
(-2.4) 		18.5
(-3) 		24.1
(-2.7) 		55.5
(-1.3) 		86.7
(0.2) 		148
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.5
(-1.8)
A 		3.6
(-2.2)
A 		15.7
(3)
A 		1.7
(-3)
A 		14
B 3.5
(-1.8)
A 		13.8
(3)
A 		0.9
(-3)
A 		1.9
(-2.5)
A 		13
C 11
(1.6)
A 		5.4
(-1)
A 		14
(3)
A 		1.1
(-3)
A 		13
avr 6.3
(0.3) 		7.6
(1.2) 		10.2
(3) 		1.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 3.4
(-2.7)
A 		6.4
(-2.1)
A 		2.1
(-3)
A 		12.6
(-0.9)
A 		27.4
(2)
A 		32.3
(3)
P 		30
B 9.5
(-2.4)
A 		5.3
(-3)
A 		13.2
(-1.8)
A 		10.7
(-2.2)
A 		41.6
(2.3)
A 		46.4
(3)
P 		41
C 17.3
(-1.5)
A 		6.6
(-2.6)
A 		2.1
(-3)
A 		15.4
(-1.7)
A 		21.6
(-1.1)
A 		62.6
(3)
P 		61
avr 10.1
(-2.4) 		6.1
(-3) 		5.8
(-3) 		12.9
(-2) 		30.2
(0.5) 		47.1
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15438
Sequence Type Exemplar sequence
Representative Public ID F36F12.7 NCBI
Target Description F36F12.7 /REP_DB=WormBase Gene ID /WP=CE17787 /TR=O76402 /GB=AAC19206.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071169 NCBI Caenorhabditis elegans F36F12.7 (F36F12.7) mRNA, complete cds. 11/11 None
SNAP00000033959 ENSEMBL cdna:SNAP chromosome:CEL140:V:2099187:2099869:1 11/11 None
GENEFINDER00000033963 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2099187:2099869:1 11/11 None
F36F12.7 ENSEMBL cdna:known chromosome:CEL140:V:2099177:2099879:1 gene:F36F12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2099186-2099869(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F12.7
Entrez Gene 178690 Entrez gene
SwissProt O76402 EMBL-EBI
WormBase CE17787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19206 Hypothetical protein F36F12.7 [Caenorhabditis elegans] ref|NP_503570.1| F36F12.7 [Caenorhabditis elegans] 7.0E-46
Sequence
Target Sequence 
>C. ELEGANS:185689_AT
ttcccgtccttttcatgtgcaagaaatcaaagccaagtggggctaagccagtcgcggata
ctccgccagcagcaatgattgctccacgttctcgtacaccgtcgccaggagccggcaagc
gttcagtgccacgcgatggagtttcatcgtcagtttctagctcgacggtctctaagaacg
agccagcgaagaaaagccccaacaatcgtggcatgtcgcagactcaggaggtcactatca
acaatggcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCGTCCTTTTCATGTGCAAGAA 4 699 65 Antisense
AAGTGGGGCTAAGCCAGTCGCGGAT 562 157 99 Antisense
ATACTCCGCCAGCAGCAATGATTGC 539 23 122 Antisense
CAGCAATGATTGCTCCACGTTCTCG 75 205 134 Antisense
CAAGCGTTCAGTGCCACGCGATGGA 14 187 180 Antisense
TGGAGTTTCATCGTCAGTTTCTAGC 696 549 201 Antisense
GTTTCTAGCTCGACGGTCTCTAAGA 372 449 217 Antisense
GAGCCAGCGAAGAAAAGCCCCAACA 243 383 244 Antisense
AGCCCCAACAATCGTGGCATGTCGC 384 83 259 Antisense
GCATGTCGCAGACTCAGGAGGTCAC 626 309 275 Antisense
GGAGGTCACTATCAACAATGGCTTT 618 515 291 Antisense
Sequence Source Affymetrix Proprietary Database