[Home] | [Total List]

[185688_at]

Description Y106G6H.9 /REP_DB=WormBase Gene ID /WP=CE20419 /TR=Q9U2Z8 /GB=CAB63339.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 22      6grp_total > 66      4grp_total > 10      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 40.8
(-3)
P 		44.2
(-2.6)
A 		51.4
(-1.7)
A 		89.4
(3)
P 		49
B 57.1
(-3)
P 		64.5
(1.9)
P 		59.9
(-1.2)
P 		66.2
(3)
P 		9
C 45.5
(-1.7)
P 		59.7
(-1.1)
P 		17.7
(-3)
A 		151.1
(3)
P 		133
avr 47.8
(-2.5) 		56.1
(-1.7) 		43
(-3) 		102.2
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 29.5
(-1.8)
A 		14.7
(-3)
A 		51.5
(-0)
P 		45
(-0.6)
A 		22.3
(-2.4)
A 		89.2
(3)
P 		75
B 70.4
(1.2)
P 		27.4
(-3)
A 		30
(-2.7)
A 		43
(-1.5)
A 		36.5
(-2.1)
P 		88.2
(3)
P 		61
C 26.7
(-3)
A 		56.1
(-0.6)
P 		51.1
(-1)
P 		76.6
(1.1)
P 		26.4
(-3)
A 		100
(3)
P 		74
avr 42.2
(-1.7) 		32.7
(-2.6) 		44.2
(-1.5) 		54.9
(-0.5) 		28.4
(-3) 		92.5
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.9
(3)
P 		9.6
(-3)
A 		13.4
(1.3)
A 		13.1
(1)
P 		5
B 18.2
(3)
P 		15.9
(-0.2)
P 		13.9
(-3)
P 		14.1
(-2.7)
P 		4
C 15
(-0.3)
P 		17.2
(0.4)
P 		6.2
(-3)
A 		25.5
(3)
P 		19
avr 16
(1.5) 		14.2
(-0.2) 		11.2
(-3) 		17.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 5.4
(-2.9)
A 		5.2
(-3)
A 		11.2
(-0.8)
P 		11.4
(-0.7)
A 		6.7
(-2.5)
A 		21.7
(3)
P 		17
B 24.5
(1)
P 		9.1
(-2.6)
A 		7.3
(-3)
A 		11.4
(-2)
A 		14.8
(-1.2)
P 		32.9
(3)
P 		26
C 9.9
(-2.7)
A 		17.1
(-0.9)
P 		13
(-1.9)
P 		15.4
(-1.3)
P 		8.5
(-3)
A 		33.5
(3)
P 		25
avr 13.3
(-2) 		10.5
(-2.8) 		10.5
(-2.8) 		12.7
(-2.2) 		10
(-3) 		29.4
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1610
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.9 NCBI
Target Description Y106G6H.9 /REP_DB=WormBase Gene ID /WP=CE20419 /TR=Q9U2Z8 /GB=CAB63339.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060333 NCBI Caenorhabditis elegans Y106G6H.9 (Y106G6H.9) mRNA, complete cds. 11/11 A 
Y106G6H.9 ENSEMBL cdna:known chromosome:CEL140:I:10462537:10463755:-1 gene:Y106G6H.9 11/11 A 
F59C6.10 ENSEMBL cdna:pseudogene chromosome:CEL140:I:10538460:10539668:-1 gene:F59C6.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10465881-10467101(+) 100.0 100.0
chrI:10462467-10463686(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.9
F59C6.10
Entrez Gene 190927 Entrez gene
SwissProt Q9U2Z8 EMBL-EBI
WormBase CE20419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63339 Hypothetical protein Y106G6H.9 [Caenorhabditis elegans] ref|NP_492734.1| Y106G6H.9 [Caenorhabditis elegans] 1.0E-170
blast CAB63340 Hypothetical protein Y106G6H.10 [Caenorhabditis elegans] ref|NP_492735.1| Y106G6H.10 [Caenorhabditis elegans] 1.0E-103
blast AAD14714 Hypothetical protein F46E10.3 [Caenorhabditis elegans] ref|NP_504657.1| F46E10.3 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:185688_AT
catcttttcaattttgactgtctcgaaattggattaagaagatcaaatttgacagcaaaa
gagttgaatatatttctccgacattggatgtcatcatgttccaatcgaagacttcaatta
tttgagtttcaaattcaagacctcaattgcatttcaactatcatgaatctaccacaccgt
acaattggaccaagagagtttgaaataactcgtaatgatgggacaagagccacgtgcacc
ttctataaacatccaaaaaaactaaatatatatttttttgaaatgcaaacaacactccgc
agttttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTTTTCAATTTTGACTGTCTCG 125 213 550 Antisense
TTGACTGTCTCGAAATTGGATTAAG 314 703 563 Antisense
GAGTTGAATATATTTCTCCGACATT 673 397 610 Antisense
GGATGTCATCATGTTCCAATCGAAG 31 515 635 Antisense
CATGTTCCAATCGAAGACTTCAATT 390 209 644 Antisense
AATTCAAGACCTCAATTGCATTTCA 108 177 681 Antisense
AACTATCATGAATCTACCACACCGT 677 139 705 Antisense
TCTACCACACCGTACAATTGGACCA 532 613 717 Antisense
TGATGGGACAAGAGCCACGTGCACC 540 567 765 Antisense
CACGTGCACCTTCTATAAACATCCA 555 199 780 Antisense
TGCAAACAACACTCCGCAGTTTTGT 471 571 833 Antisense
Sequence Source Affymetrix Proprietary Database